Gene detail

Detailed information of evm.model.Ap9.1267 in Astrangia poculata

Genomic Location: Ap9:13717305...13729497
NR annotation: KAJ7388681.1, Acyl-coenzyme A oxidase (Acyl-CoA oxidase) [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.1267

atgaagtcgtctagtaccaaagtaaatcctgatcttgcaaaagagcgagggaaaacttcatttaacacagcggagctgacttacttgcttcacggaggacgacagaagacggagaggaaaagattcctggagtcattattactgaaggatcctgtgtttagtaaagaagatgcatatgtactggaccgcaaacatgcttatgaaagatatttacagaaaggattgcgaatggttgagctgacaaaggaatatcaaattactgatccacaggagctgggcatgttagagaagtttacaggtgctatatttccatttcaccttagcagagttatgtttatacctactataaagggtcagggaactgaagaacaaaaagccaagtggcttcctcttgctgagtcttatcagatcattggaacttatgcacagactgaactaggtcatggtacttatgtgcgtgggctggagactactgcaacatatgataagaggactcaagagtttgttattcactcgccgtcactgtcagcatgcaaatggtggccaggcaacatgggcaagtcttcaaattttgctattgtgcctgcaaggttaatagtagataggaaggatcatggaatacagatgtttatagttcagctacgagatctgcagacacatcaacctttacctggtgtaacggtaggagatattggagccaaattttcacccttattgaatggaagtgataatggatatctaatgtttgatcatgtacgaattccacttaaccaaatgctgatgggactagcaaagctttcccctgatggcaccttcacaaagtcagcaaactccaaacttttatatggcaccatgagttttgttcgtgcagcaattgttcaagattcctactggctgttatccagagccatgactattgctattcgctacagtgcagtacggcggcaaagtcagctcaaaccaggtgaacctgaggctcagattattgcctataaaactcaacagtacaaactgttaccaggcttagccatggcctatgctataaagtttacttctgaccatgtttggagatcgtttcaagaaatgcaaaagaaaattgctgctggagacttttctatgttaccagaggtccatgccatcaccagtggtcttaaagcattctgctcgtcaacatccatgcgtcatgcggagacatgtcgactggcatgtggtgggcatggcttcttactgtgcagtggtctgcctgagatgtatacagtagcaaatgcttcctgcacttatgagggagataatgacgttctttacttacaagtagctaggtatcttatgaaatgtgcttcacaagtacaagagggcaaggcgcctccttcgtcgctttcatttttgtcacgcaaaccagaactgtgcctggtgacaagagatgaagaattcttggatcctcgagttcaaagaaaaatttatcaggatagaacgttaagcgaggtgatgattgtggcggaaagattacaaagcagaatattatctggaatggattctgctgatgcttggaatgaagtgtccgtagacttagtacgctgtgctaagggctacagtaactgtgtaatggtattatatctattggaatcaatggagaagctatctggtgtgagcaccaatttacgcagagtactcaaatctctggcagatttatttgtcctgtatggtattgctgagaattcaggcagttttcttgaggctggagttctggattgcagccagattcaaaccatacgacagcaagtgtacgccttgatggaaaaacttaggcctgaagcagtgtctctggtagacgcctttgattattcagattatgtgctcaattcagcgctgggacgctacgatggcaacgtatatgaagacctttttagatgggcccagagatcagtcttaaataaagaacaggtgcagccaggctactacaagtacctgcggccattaatgaacagcaataaatccaagctgtag

Transcript

evm.model.Ap9.1267

ATGAAGTCGTCTAGTACCAAAGTAAATCCTGATCTTGCAAAAGAGCGAGGGAAAACTTCATTTAACACAGCGGAGCTGACTTACTTGCTTCACGGAGGACGACAGAAGACGGAGAGGAAAAGATTCCTGGAGTCATTATTACTGAAGGATCCTGTGTTTAGTAAAGAAGATGCATATGTACTGGACCGCAAACATGCTTATGAAAGATATTTACAGAAAGGATTGCGAATGGTTGAGCTGACAAAGGAATATCAAATTACTGATCCACAGGAGCTGGGCATGTTAGAGAAGTTTACAGGTGCTATATTTCCATTTCACCTTAGCAGAGTTATGTTTATACCTACTATAAAGGGTCAGGGAACTGAAGAACAAAAAGCCAAGTGGCTTCCTCTTGCTGAGTCTTATCAGATCATTGGAACTTATGCACAGACTGAACTAGGTCATGGTACTTATGTGCGTGGGCTGGAGACTACTGCAACATATGATAAGAGGACTCAAGAGTTTGTTATTCACTCGCCGTCACTGTCAGCATGCAAATGGTGGCCAGGCAACATGGGCAAGTCTTCAAATTTTGCTATTGTGCCTGCAAGGTTAATAGTAGATAGGAAGGATCATGGAATACAGATGTTTATAGTTCAGCTACGAGATCTGCAGACACATCAACCTTTACCTGGTGTAACGGTAGGAGATATTGGAGCCAAATTTTCACCCTTATTGAATGGAAGTGATAATGGATATCTAATGTTTGATCATGTACGAATTCCACTTAACCAAATGCTGATGGGACTAGCAAAGCTTTCCCCTGATGGCACCTTCACAAAGTCAGCAAACTCCAAACTTTTATATGGCACCATGAGTTTTGTTCGTGCAGCAATTGTTCAAGATTCCTACTGGCTGTTATCCAGAGCCATGACTATTGCTATTCGCTACAGTGCAGTACGGCGGCAAAGTCAGCTCAAACCAGGTGAACCTGAGGCTCAGATTATTGCCTATAAAACTCAACAGTACAAACTGTTACCAGGCTTAGCCATGGCCTATGCTATAAAGTTTACTTCTGACCATGTTTGGAGATCGTTTCAAGAAATGCAAAAGAAAATTGCTGCTGGAGACTTTTCTATGTTACCAGAGGTCCATGCCATCACCAGTGGTCTTAAAGCATTCTGCTCGTCAACATCCATGCGTCATGCGGAGACATGTCGACTGGCATGTGGTGGGCATGGCTTCTTACTGTGCAGTGGTCTGCCTGAGATGTATACAGTAGCAAATGCTTCCTGCACTTATGAGGGAGATAATGACGTTCTTTACTTACAAGTAGCTAGGTATCTTATGAAATGTGCTTCACAAGTACAAGAGGGCAAGGCGCCTCCTTCGTCGCTTTCATTTTTGTCACGCAAACCAGAACTGTGCCTGGTGACAAGAGATGAAGAATTCTTGGATCCTCGAGTTCAAAGAAAAATTTATCAGGATAGAACGTTAAGCGAGGTGATGATTGTGGCGGAAAGATTACAAAGCAGAATATTATCTGGAATGGATTCTGCTGATGCTTGGAATGAAGTGTCCGTAGACTTAGTACGCTGTGCTAAGGGCTACAGTAACTGTGTAATGGTATTATATCTATTGGAATCAATGGAGAAGCTATCTGGTGTGAGCACCAATTTACGCAGAGTACTCAAATCTCTGGCAGATTTATTTGTCCTGTATGGTATTGCTGAGAATTCAGGCAGTTTTCTTGAGGCTGGAGTTCTGGATTGCAGCCAGATTCAAACCATACGACAGCAAGTGTACGCCTTGATGGAAAAACTTAGGCCTGAAGCAGTGTCTCTGGTAGACGCCTTTGATTATTCAGATTATGTGCTCAATTCAGCGCTGGGACGCTACGATGGCAACGTATATGAAGACCTTTTTAGATGGGCCCAGAGATCAGTCTTAAATAAAGAACAGGTGCAGCCAGGCTACTACAAGTACCTGCGGCCATTAATGAACAGCAATAAATCCAAGCTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z1N0	Peroxisomal acyl-coenzyme A oxidase 1 OS=Cavia porcellus OX=10141 GN=ACOX1 PE=2 SV=1
Q5RC19	Peroxisomal acyl-coenzyme A oxidase 1 OS=Pongo abelii OX=9601 GN=ACOX1 PE=2 SV=2
Q15067	Peroxisomal acyl-coenzyme A oxidase 1 OS=Homo sapiens OX=9606 GN=ACOX1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004607 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01756 all species →	ACOX	Acyl-CoA oxidase	Family	Interproscan
PF14749 all species →	Acyl-CoA_ox_N	Acyl-coenzyme A oxidase N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR002655 all species →	Domain	Acyl-CoA oxidase, C-terminal	Interproscan
IPR012258 all species →	Family	Acyl-CoA oxidase	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR029320 all species →	Domain	Acyl-coenzyme A oxidase, N-terminal	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10909 all species →	ELECTRON TRANSPORT OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003997 all species →	Molecular Function	acyl-CoA oxidase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005504 all species →	Molecular Function	fatty acid binding	Interproscan
GO:0033540 all species →	Biological Process	fatty acid beta-oxidation using acyl-CoA oxidase	Interproscan
GO:0055088 all species →	Biological Process	lipid homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00232	E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase	EC:1.3.3.6	Alcoholic liver disease	ko04936	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.