Gene detail

Detailed information of evm.model.Ap9.140 in Astrangia poculata

Genomic Location: Ap9:1267221...1270566
NR annotation: KAJ7361745.1, ribosomal protein L30 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58375	Large ribosomal subunit protein eL30 OS=Spodoptera frugiperda OX=7108 GN=RpL30 PE=3 SV=1
P58374	Large ribosomal subunit protein eL30 OS=Branchiostoma belcheri OX=7741 GN=RPL30 PE=3 SV=1
Q3T0D5	Large ribosomal subunit protein eL30 OS=Bos taurus OX=9913 GN=RPL30 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007753 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01248 all species →	Ribosomal_L7Ae	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000231 all species →	Family	Large ribosomal subunit protein eL30	Interproscan
IPR022991 all species →	Conserved_site	Large ribosomal subunit protein eL30, conserved site	Interproscan
IPR004038 all species →	Domain	Ribosomal protein eL8/eL30/eS12/Gadd45	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR039109 all species →	Family	Large ribosomal subunit protein eL30-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11449 all species →	RIBOSOMAL PROTEIN L30	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02908	RP-L30e, RPL30; large subunit ribosomal protein L30e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.