Genomic Location: Ap9:16300176...16305033
NR annotation: XP_020615945.1, probable peptidyl-tRNA hydrolase 2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap9.1506.1.5f15e7a8 |
| Transcript |
| evm.model.Ap9.1506.1.5f15e7a8 |
| Protein |
| evm.model.Ap9.1506.1.5f15e7a8 |
| UniProt accession | Description |
|---|---|
| O76387 | Probable peptidyl-tRNA hydrolase 2 OS=Caenorhabditis elegans OX=6239 GN=C24G6.8 PE=3 SV=1 |
| A4YD82 | Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2) OX=399549 GN=pth PE=3 SV=1 |
| Q877G5 | Peptidyl-tRNA hydrolase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=pth PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009317 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01981 all species → | PTH2 | Peptidyl-tRNA hydrolase PTH2 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002833 all species → | Family | Peptidyl-tRNA hydrolase, PTH2 | Interproscan |
| IPR023476 all species → | Homologous_superfamily | Peptidyl-tRNA hydrolase II domain superfamily | Interproscan |
| IPR009060 all species → | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR015940 all species → | Domain | Ubiquitin-associated domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12649 all species → | PEPTIDYL-TRNA HYDROLASE 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004045 all species → | Molecular Function | aminoacyl-tRNA hydrolase activity | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
evm.model.Ap9.1506.1.5f15e7a8.Transcript abundance of evm.model.Ap9.1506.1.5f15e7a8 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
