Gene detail

Detailed information of evm.model.Ap9.1645 in Astrangia poculata

Genomic Location: Ap9:17841184...17855748
NR annotation: XP_020603818.1, uncharacterized protein LOC110042791 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.1645

atggcagctgctgcaccttcactcctggccagctctgtggagaaaacaaatggagctaagctcagccgacttcttattgatggtggaacaacagttctaaggaatgtttttgatagttatcatcctcctgcaaacctggctgctgatctcaatgcaaactatctaactctgaacaatctcttaaggagaaaagtcttgcgtacagctcaatgggaccaactgttcccacctggtggagctgcaccagactctaaaacatttgacatcactcttttattcctccttctaaccaacatttgcggactcgtccctcccctctcaggctggcacactaaaccaccccaaagtgatacatcgcgtgaggcaaaccttgctcacataaagatttttcgcaatgagttgtatggtcatgtgactaccactggtgttgatacaccaactttctcttctctgtggctggaaattagtgctgttcttgttgctcttggtttgaatcagacagaaattgatcgattgaaggcagagcattgtggggaggaggattatcttgatgtgttacttgactgggctgacagtgaagaggatatcaaatcgcagctgaaggaactgcatcaatctcagaccgaaacacaacaagatgttggcaaagtacttcagacccagctagaagatcgcataactcttcaggataacaagtcaaaactggaagatgttcatcaggcccagaccaacatacaaggaactgttaagagagtacgtcagacccaactagaagatcatgaaacacttcaggatagcaagtcaaaactggatgaagtacatcagacccagaccaagatacaagaaactgttgaaagatttcgtcagatccaactaggagatcatgaaacacttcaggacaacaagtcaaagctgaataaagtacaccagacccaggccaagacacaagaaattacagagagagtacgtcagacccaagtagaagatcatgaaacacttcaggacaacaagttaaagctggagaaagtacatcacacccaggctaaaacacaagaaattacagagagagtacgtcagacccaactagaagatcgtgaaacacttcaggaaagcaagtcaaaactggacgatctacgtcaagtccagaccaagacacaaggaattgttgagggtgtggtgaagacccaagaagagcattccgaaaccttgcaagcggtaaagcaaacagttgatagcttaaaagaacaaagatatgtagacagggaagaagaagtcctacagaaccttgctaagtcagagttcaaaggagacattgagtatcacgtgggacgatttcaagaaggcacacgtgagtgggtgtttaacaaagttcaaaactggttagacgacagaaactctcaaaaccgcgtggtggtgatcactgcaaatgctggaatgggaaaatcagtgatttctgccgtcgtttgcaaaagaatgcaagaaactggcagactgtcaggaagccacttttgtcagcataataactcacgttaccgaaatcctcagctgatgcttcagtccttagcctgtcacttgtttcatgccctgccagagtacaaacaagctcttgtgaaacagctgccaagaaatctgggtaaagatctcaacaacatgggtgtggaggaactgtttgctctgctgtttaaagaacctctgagcactgtagctgacccgggaaggaacatgctcatggtgatagatggcgtagatgagagtgactaccaagaacggaatgagctgcttgatgttattgctaaccacttctgcaagcttccatgttggattcgatttctatgtacgacccgaccagagagaaacattgtagaggcattaaaacagttgaatccatttgtgctcgaacccaatgaagaagagaatgtgcaagacatcaagcggttccttaaaaataggacgcaaaaactaatgaaaccaggaaataaaggtgccattgtggaaaagcttgtagaaaagtctgaaggactcatgctgtacgcgtacttccttgtttcgtatattgaagagaatgtgtcaattctggaccaaggagatcttggtggcagcttacctttagcaatttcttcagtgtactgttcctattttaaacgactagagaatgaacttatgaaggagcttggtgtgaaggaagaaaattttctgagtttgctttgtactgttactgtatcacgggagcccttgccaattgacttcgcttctaaaattttgattcctagtgcaagctcaccagttgcaaggcgtaaagtacttaaagctatcggaagtgtgtcctcgcttcttcccattcgtgatggctgtctacacgtctttcacaagtctgtttatgattggttgacggacacatcgtgttatggagagcacgactttaccgtggatgagaaagaaggccatcgtattcttgcaagcctctgttctgatgaacttgatgatatgaaacagaaaggtgttcctcacacacagttcagctccaatgagaagtatgcgctacatcatggtgtacggcacatgttactgttagacaagaatatgagatcacgaagcctggaggaatgtgtacaaacatacgtggtggatttagagcttttgtatgctaagctatgtataaacgattcattagcagccgaagacattttatggcttcaaagccacgacacttctcagtcactgtctgaagatagtaaagctttgttgaacaccttaactatcctgctaagaaagtacttcaatacaattacaaatcatcctcgcgtgtttttccaaaccgtgctgaatgagggaggaacagtactatcctctgtggcatcaaacctgttgcagaacaaatatcctgaaataccatatatggaattcgttcacaaagagatgcagcagggagctgttcaagcccgttttcaatgttcatctcaagtagcttgttttgatgtttcaccgcagttagactacatggtgtgtgaatgtgacgacggaacgattcagctgtggtcactccatactggcaagcttgtatgggaacgtcctgttgtggtaatgaaacgttactaccaggatatgttgatcacgggagtatttagaaagtcgccattctcacctgacttgtcattttatcgctcagttgtttttcatcctactgcagacgttgtcttaccaggagttcttagccatgcctatacttttgatggagaactgaaacaactttttcctgaaagcaactgcagtttcacggtttgctcaatttcagcagacaagaccaagatgctaactgattgccctgacgatgctaaatgcattattatgcggagtctagagaatggttcagagattactcgtaccacaagaaatgaagctgttttgtcgtttgcgtggtcacgagatgggaagttgctggcaatttctcattccacgggctccatttctatcgttgatacgatgaatggttttagaacactagcagaaacggtcatcccagaagtatgtggaatgataaagttctcacctgactgtcggtctcttttttgcatgcatgacaaaagttttttgagtttcgaaaatcgaaaaatcttttgtttaaaaaccagtatagcggaacttcacagctgtacattgtatgactgtgaatcctatgtgccctgggaatttgaatcacatagcgaggctggatttttgctaggagatcctattgcgtttggtgatggtgcgtttgtttttgtgttaaataagcaaactttattgaggggttatccttatagcagttccatagacatgttgaacataaatgagatatggaatgtaactgacagcgaagctgcacttaccaggatcagtgacattgtattttctttgagtagcgagaccttttatgttgttgatgacgcggacagaccaacagttagcgcttgggatgtttcaagtatgaagctcataggacagaaaagcagacaaacatacaacttcaatcttgtagctgtgaaggaaggtgttttattaacaacagcaagtggtactcttgagctgtggaattttgaattatctaagtgcgtccgaagttggaccaacgcgttcggaatcacaaagattatccccatatcggaagaacgagtagcgtgtgaagcaaagaacaaagtgaccatcttggatactactagcggagagattgtgtcgacattccgaataagaggtaatggacgtttggttgcatgtaacagtaaatgtcagctgttgacttccgacatggacggcccacttaaattgtcggatggtaaaactacgctttggacagagatactcccttttgtgaacaatccacttgggatgttttctctttctgaacagtttgtcgtaatttgggaacctacgtccttgtacgtccttgatgcactttcaggaaaaacactgcacgttttacttaacgaaaatgatgcctatcggatcaatgattgtgcatttgtcagtgacgaggaatgtgttatcagcaccatggctgcctcaggagattattgtcttcagctgtttaacttcgagtctggtgacctgctgagtgtaatcgatctggacagacaagcgaactgtttagcagcctgtcctcgtaagcgacttctcgccattggccaaagtaactctaaaaacggattcagacttatccaggtgcggttgccacaagataaagacagcaggaagagccaaagtatggccaacacgccagagatcgaagaaagaagagaaaacacgagggagactaacacaacagaaatcaataacagcagagagaacgagaggtgtgttcttgtgtag

Transcript

evm.model.Ap9.1645

ATGGCAGCTGCTGCACCTTCACTCCTGGCCAGCTCTGTGGAGAAAACAAATGGAGCTAAGCTCAGCCGACTTCTTATTGATGGTGGAACAACAGTTCTAAGGAATGTTTTTGATAGTTATCATCCTCCTGCAAACCTGGCTGCTGATCTCAATGCAAACTATCTAACTCTGAACAATCTCTTAAGGAGAAAAGTCTTGCGTACAGCTCAATGGGACCAACTGTTCCCACCTGGTGGAGCTGCACCAGACTCTAAAACATTTGACATCACTCTTTTATTCCTCCTTCTAACCAACATTTGCGGACTCGTCCCTCCCCTCTCAGGCTGGCACACTAAACCACCCCAAAGTGATACATCGCGTGAGGCAAACCTTGCTCACATAAAGATTTTTCGCAATGAGTTGTATGGTCATGTGACTACCACTGGTGTTGATACACCAACTTTCTCTTCTCTGTGGCTGGAAATTAGTGCTGTTCTTGTTGCTCTTGGTTTGAATCAGACAGAAATTGATCGATTGAAGGCAGAGCATTGTGGGGAGGAGGATTATCTTGATGTGTTACTTGACTGGGCTGACAGTGAAGAGGATATCAAATCGCAGCTGAAGGAACTGCATCAATCTCAGACCGAAACACAACAAGATGTTGGCAAAGTACTTCAGACCCAGCTAGAAGATCGCATAACTCTTCAGGATAACAAGTCAAAACTGGAAGATGTTCATCAGGCCCAGACCAACATACAAGGAACTGTTAAGAGAGTACGTCAGACCCAACTAGAAGATCATGAAACACTTCAGGATAGCAAGTCAAAACTGGATGAAGTACATCAGACCCAGACCAAGATACAAGAAACTGTTGAAAGATTTCGTCAGATCCAACTAGGAGATCATGAAACACTTCAGGACAACAAGTCAAAGCTGAATAAAGTACACCAGACCCAGGCCAAGACACAAGAAATTACAGAGAGAGTACGTCAGACCCAAGTAGAAGATCATGAAACACTTCAGGACAACAAGTTAAAGCTGGAGAAAGTACATCACACCCAGGCTAAAACACAAGAAATTACAGAGAGAGTACGTCAGACCCAACTAGAAGATCGTGAAACACTTCAGGAAAGCAAGTCAAAACTGGACGATCTACGTCAAGTCCAGACCAAGACACAAGGAATTGTTGAGGGTGTGGTGAAGACCCAAGAAGAGCATTCCGAAACCTTGCAAGCGGTAAAGCAAACAGTTGATAGCTTAAAAGAACAAAGATATGTAGACAGGGAAGAAGAAGTCCTACAGAACCTTGCTAAGTCAGAGTTCAAAGGAGACATTGAGTATCACGTGGGACGATTTCAAGAAGGCACACGTGAGTGGGTGTTTAACAAAGTTCAAAACTGGTTAGACGACAGAAACTCTCAAAACCGCGTGGTGGTGATCACTGCAAATGCTGGAATGGGAAAATCAGTGATTTCTGCCGTCGTTTGCAAAAGAATGCAAGAAACTGGCAGACTGTCAGGAAGCCACTTTTGTCAGCATAATAACTCACGTTACCGAAATCCTCAGCTGATGCTTCAGTCCTTAGCCTGTCACTTGTTTCATGCCCTGCCAGAGTACAAACAAGCTCTTGTGAAACAGCTGCCAAGAAATCTGGGTAAAGATCTCAACAACATGGGTGTGGAGGAACTGTTTGCTCTGCTGTTTAAAGAACCTCTGAGCACTGTAGCTGACCCGGGAAGGAACATGCTCATGGTGATAGATGGCGTAGATGAGAGTGACTACCAAGAACGGAATGAGCTGCTTGATGTTATTGCTAACCACTTCTGCAAGCTTCCATGTTGGATTCGATTTCTATGTACGACCCGACCAGAGAGAAACATTGTAGAGGCATTAAAACAGTTGAATCCATTTGTGCTCGAACCCAATGAAGAAGAGAATGTGCAAGACATCAAGCGGTTCCTTAAAAATAGGACGCAAAAACTAATGAAACCAGGAAATAAAGGTGCCATTGTGGAAAAGCTTGTAGAAAAGTCTGAAGGACTCATGCTGTACGCGTACTTCCTTGTTTCGTATATTGAAGAGAATGTGTCAATTCTGGACCAAGGAGATCTTGGTGGCAGCTTACCTTTAGCAATTTCTTCAGTGTACTGTTCCTATTTTAAACGACTAGAGAATGAACTTATGAAGGAGCTTGGTGTGAAGGAAGAAAATTTTCTGAGTTTGCTTTGTACTGTTACTGTATCACGGGAGCCCTTGCCAATTGACTTCGCTTCTAAAATTTTGATTCCTAGTGCAAGCTCACCAGTTGCAAGGCGTAAAGTACTTAAAGCTATCGGAAGTGTGTCCTCGCTTCTTCCCATTCGTGATGGCTGTCTACACGTCTTTCACAAGTCTGTTTATGATTGGTTGACGGACACATCGTGTTATGGAGAGCACGACTTTACCGTGGATGAGAAAGAAGGCCATCGTATTCTTGCAAGCCTCTGTTCTGATGAACTTGATGATATGAAACAGAAAGGTGTTCCTCACACACAGTTCAGCTCCAATGAGAAGTATGCGCTACATCATGGTGTACGGCACATGTTACTGTTAGACAAGAATATGAGATCACGAAGCCTGGAGGAATGTGTACAAACATACGTGGTGGATTTAGAGCTTTTGTATGCTAAGCTATGTATAAACGATTCATTAGCAGCCGAAGACATTTTATGGCTTCAAAGCCACGACACTTCTCAGTCACTGTCTGAAGATAGTAAAGCTTTGTTGAACACCTTAACTATCCTGCTAAGAAAGTACTTCAATACAATTACAAATCATCCTCGCGTGTTTTTCCAAACCGTGCTGAATGAGGGAGGAACAGTACTATCCTCTGTGGCATCAAACCTGTTGCAGAACAAATATCCTGAAATACCATATATGGAATTCGTTCACAAAGAGATGCAGCAGGGAGCTGTTCAAGCCCGTTTTCAATGTTCATCTCAAGTAGCTTGTTTTGATGTTTCACCGCAGTTAGACTACATGGTGTGTGAATGTGACGACGGAACGATTCAGCTGTGGTCACTCCATACTGGCAAGCTTGTATGGGAACGTCCTGTTGTGGTAATGAAACGTTACTACCAGGATATGTTGATCACGGGAGTATTTAGAAAGTCGCCATTCTCACCTGACTTGTCATTTTATCGCTCAGTTGTTTTTCATCCTACTGCAGACGTTGTCTTACCAGGAGTTCTTAGCCATGCCTATACTTTTGATGGAGAACTGAAACAACTTTTTCCTGAAAGCAACTGCAGTTTCACGGTTTGCTCAATTTCAGCAGACAAGACCAAGATGCTAACTGATTGCCCTGACGATGCTAAATGCATTATTATGCGGAGTCTAGAGAATGGTTCAGAGATTACTCGTACCACAAGAAATGAAGCTGTTTTGTCGTTTGCGTGGTCACGAGATGGGAAGTTGCTGGCAATTTCTCATTCCACGGGCTCCATTTCTATCGTTGATACGATGAATGGTTTTAGAACACTAGCAGAAACGGTCATCCCAGAAGTATGTGGAATGATAAAGTTCTCACCTGACTGTCGGTCTCTTTTTTGCATGCATGACAAAAGTTTTTTGAGTTTCGAAAATCGAAAAATCTTTTGTTTAAAAACCAGTATAGCGGAACTTCACAGCTGTACATTGTATGACTGTGAATCCTATGTGCCCTGGGAATTTGAATCACATAGCGAGGCTGGATTTTTGCTAGGAGATCCTATTGCGTTTGGTGATGGTGCGTTTGTTTTTGTGTTAAATAAGCAAACTTTATTGAGGGGTTATCCTTATAGCAGTTCCATAGACATGTTGAACATAAATGAGATATGGAATGTAACTGACAGCGAAGCTGCACTTACCAGGATCAGTGACATTGTATTTTCTTTGAGTAGCGAGACCTTTTATGTTGTTGATGACGCGGACAGACCAACAGTTAGCGCTTGGGATGTTTCAAGTATGAAGCTCATAGGACAGAAAAGCAGACAAACATACAACTTCAATCTTGTAGCTGTGAAGGAAGGTGTTTTATTAACAACAGCAAGTGGTACTCTTGAGCTGTGGAATTTTGAATTATCTAAGTGCGTCCGAAGTTGGACCAACGCGTTCGGAATCACAAAGATTATCCCCATATCGGAAGAACGAGTAGCGTGTGAAGCAAAGAACAAAGTGACCATCTTGGATACTACTAGCGGAGAGATTGTGTCGACATTCCGAATAAGAGGTAATGGACGTTTGGTTGCATGTAACAGTAAATGTCAGCTGTTGACTTCCGACATGGACGGCCCACTTAAATTGTCGGATGGTAAAACTACGCTTTGGACAGAGATACTCCCTTTTGTGAACAATCCACTTGGGATGTTTTCTCTTTCTGAACAGTTTGTCGTAATTTGGGAACCTACGTCCTTGTACGTCCTTGATGCACTTTCAGGAAAAACACTGCACGTTTTACTTAACGAAAATGATGCCTATCGGATCAATGATTGTGCATTTGTCAGTGACGAGGAATGTGTTATCAGCACCATGGCTGCCTCAGGAGATTATTGTCTTCAGCTGTTTAACTTCGAGTCTGGTGACCTGCTGAGTGTAATCGATCTGGACAGACAAGCGAACTGTTTAGCAGCCTGTCCTCGTAAGCGACTTCTCGCCATTGGCCAAAGTAACTCTAAAAACGGATTCAGACTTATCCAGGTGCGGTTGCCACAAGATAAAGACAGCAGGAAGAGCCAAAGTATGGCCAACACGCCAGAGATCGAAGAAAGAAGAGAAAACACGAGGGAGACTAACACAACAGAAATCAATAACAGCAGAGAGAACGAGAGGTGTGTTCTTGTGTAGTGATGGCTGAATGATTCCTCTCCTTAACACGACAACTCTGCCGCAAGCTTTTCCCAAACGGGTGAGCCTGGAGGACATGCTGTTTAGCGGACATAGCGCCAGCGAGTGCGTGGAACGAGCGAGTAACGCGCGCGGACTTAACGCTTCTCGGGAGCACACCGCATTTTGTCCTGGAGGCTGACTTGTCATGTTCTTGTACAGAAGAAACAT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000186 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13191 all species →	AAA_16	AAA ATPase domain	Domain	Interproscan
PF18738 all species →	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011044 all species →	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR041664 all species →	Domain	Orc1-like, AAA ATPase domain	Interproscan
IPR041249 all species →	Domain	DZIP3-like HEPN domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10039 all species →	AMELOGENIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.1645.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.