Genomic Location: Ap9:18341317...18346078
NR annotation: CAH3180897.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap9.1686 |
| Transcript |
| evm.model.Ap9.1686 |
| Protein |
| evm.model.Ap9.1686 |
| UniProt accession | Description |
|---|---|
| Q6P0I8 | Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2 |
| Q28F19 | Exosome complex component MTR3 OS=Xenopus tropicalis OX=8364 GN=exosc6 PE=2 SV=1 |
| Q8BTW3 | Exosome complex component MTR3 OS=Mus musculus OX=10090 GN=Exosc6 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001823 (this species only) |
evm.model.Ap9.1686. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036345 all species → | Homologous_superfamily | Exoribonuclease, PH domain 2 superfamily | Interproscan |
| IPR027408 all species → | Homologous_superfamily | PNPase/RNase PH domain superfamily | Interproscan |
| IPR050080 all species → | Family | Ribonuclease PH | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11953 all species → | EXOSOME COMPLEX COMPONENT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000176 all species → | Cellular Component | nuclear exosome (RNase complex) | Interproscan |
| GO:0000177 all species → | Cellular Component | cytoplasmic exosome (RNase complex) | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0016075 all species → | Biological Process | rRNA catabolic process | Interproscan |
| GO:0034427 all species → | Biological Process | obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | Interproscan |
| GO:0034475 all species → | Biological Process | U4 snRNA 3'-end processing | Interproscan |
| GO:0071028 all species → | Biological Process | nuclear mRNA surveillance | Interproscan |
| GO:0071051 all species → | Biological Process | poly(A)-dependent snoRNA 3'-end processing | Interproscan |
evm.model.Ap9.1686.Transcript abundance of evm.model.Ap9.1686 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
