Detailed information of evm.model.Ap9.1700 in Astrangia poculata

Genomic Location: Ap9:18495476...18528501
NR annotation: KAJ7389403.1, General transcription factor 3C polypeptide 2 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BL74General transcription factor 3C polypeptide 2 OS=Mus musculus OX=10090 GN=Gtf3c2 PE=2 SV=2
Q8WUA4General transcription factor 3C polypeptide 2 OS=Homo sapiens OX=9606 GN=GTF3C2 PE=1 SV=2
Q5RDC3General transcription factor 3C polypeptide 2 OS=Pongo abelii OX=9601 GN=GTF3C2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004348 (this species only)
Transcription factor familyzf-C2H2 · all TF in this species

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap9.1700. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR017956
all species →		Conserved_siteAT hook, DNA-binding motifInterproscan
IPR052416
all species →		FamilyGeneral transcription factor 3C componentInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15052
all species →		RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000127
all species →		Cellular Componenttranscription factor TFIIIC complexInterproscan
GO:0006383
all species →		Biological Processtranscription by RNA polymerase IIIInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15200GTF3C2; general transcription factor 3C polypeptide 2-Transcription machineryko03021deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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