Detailed information of evm.model.Ap9.1700.1.5f15e7df in Astrangia poculata

Genomic Location: Ap9:18495476...18519428
NR annotation: KAJ7389403.1, General transcription factor 3C polypeptide 2 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8WUA4General transcription factor 3C polypeptide 2 OS=Homo sapiens OX=9606 GN=GTF3C2 PE=1 SV=2
Q5RDC3General transcription factor 3C polypeptide 2 OS=Pongo abelii OX=9601 GN=GTF3C2 PE=2 SV=1
Q8BL74General transcription factor 3C polypeptide 2 OS=Mus musculus OX=10090 GN=Gtf3c2 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004348 (this species only)
Transcription factor familyzf-C2H2 · all TF in this species

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap9.1700.1.5f15e7df. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR052416
all species →		FamilyGeneral transcription factor 3C componentInterproscan
IPR017956
all species →		Conserved_siteAT hook, DNA-binding motifInterproscan
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15052
all species →		RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000127
all species →		Cellular Componenttranscription factor TFIIIC complexInterproscan
GO:0006383
all species →		Biological Processtranscription by RNA polymerase IIIInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap9.1700.1.5f15e7df.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap9.1700.1.5f15e7df across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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