Gene detail

Detailed information of evm.model.Ap9.1779 in Astrangia poculata

Genomic Location: Ap9:19561105...19569759
NR annotation: CAH3159111.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.1779

atggcttcatctattttttcgtgcgaggatgtaagagaatggatgatgaaggaggggtttaaggattatgctgactttttctatgatcaagtaattgatggtgaatcacttaagtgtatgaatgaagaaacacttaagacccttgtgccccttgccggtccacgtttgaagatattggacaagataaagaagttgaatgctcaggaaagcatgaggtcctctggattgccaaccgttgtggttccagagccggaagaaattctggttgtcgataaaggtgaaacatcaggcacaagtgacaaaagttctaaaagatccattgaggcgacacgacgtcagagactagctagaaataagagaaaacgagcccagaaaaggcaattgaagaaagatgaccataaagagttaatgcaagaaaaatgcaaaagactggcaacagaagaaaaattggttttggctgaaaaaaataaagagaaattttaccaaatgtggcgtcaaacagagcgtgaaaaagaaaaattattccagttacagatgactatggacaagaaatcaaccaataataagctgatttcaaattattcttcaaagaatgctgttggcataacatccttgctggagattccaagggaagcaataaatttggaaggtgattccaaagatataaccctgggtgaaggcaaatttggcaaagtaacacttgcttcttacagaggaatgcctgttgctgtcaagcaatttaatgctgatgtttccctatcagaaattaaacatgaggcaaacattatttctgcatttaaccacttaaatttgccagttttgtttggaatttcatgtcaggaaaaaccctatctgctgatgtttcaattctatggagtagcagggaaagccatgactttaaatgactgttgtcatccttcctctgtgccactgaagacttcaaattggttgaatgcagtggtacaactgtgcgatgcactgaggtatattcacagccaaaagattctgcacaatgacataaaatctgataatattgtaatggtgaaagaggaaaatgaagaattgctttactctcctatcttggttgactttggcaaatctaagcatttttcagaggtccgaaaaaagcaattaactgagagggaaaaagaaatctacagaaagagacatttccatgtggcacctgaagttattgaaggattgcatgcaccatcagtgaaaagtgatgtgtattcaattgggcttgtattctatagggtttacaaactagtcaaggtcaaggttctgaaagacttatgcaaaaagtgtttagcactatacaacgagagatgtacatctcaagaacttttggaaatggcgggcacattgttgcacgatcactacccagaacccaaacctgcaaaaagtcttgaaaaaaagaactggccaaataactttgaacttccaaagacttttgcaccaattgtgacgcaggctttggagaagaaagtgtatatggaaaagaaggcccgcaccaaattcatacaagccatatatgatgccatctgccaatacaccatttccccaacacctgaccaaagaagacaagtctgccgcaaaataatatctgactatccatttcaagcggatgtagatggaggctttgaaagttggtatagaatactcactgacaaatgtaaaaacgaatgccgaggtgacgtcccagacccaggggttatgtctcgtaaacgtaaaaacgcagatggcagcaagaagcagccaaaacctgaaaaaggactgcggagaggtattgttaaatgggccccaccacacattgagggggaagataaagcttcgcatgacaaacacgaaagctggatgcaaacagaatctaaaaaaaaggacaagagatatgacattgtcacacgaaaaatggatctaacatattccttcaggagggaatacttgactggacagccagtgcctcttcttcaaatcaaggagaaatacccttttctttttgatcaaaaagaggtcaagaatgaatattgcaggctgatggctgacaaagaggctgccaatcaaattgaagaaaactttattttgatggggcaaaagataattgaatatgccagaaggaaaaatataaaggggtcacaaccccttctcagcctcctggaacctgacaaggacgatagtgaaaacatgccaacatcagaggaccaagcactagttggattgtgtcttttgcctctcattctggaacggccaccaaaaagtggactccagccttcacactttctttaccagagtggcagtgatgcaaaagaagtggcgaaaggaacaagggagggaatgcctccctttattatctttgaaggagaagtgcactccccaaacgatatatttattagtggggagcaggatctccttttgaagataaatggggggcataccagtgccctgatcaccttgatgttattatattttgtatgtaatatacaataccccaaggagtgtatgaacgtttatatattccttcagagatatgtgctgaaagtatacgacagtgtaaaacttcccgcgaaagtaatgcaattcttaaacgaattgaactgttag

Transcript

evm.model.Ap9.1779

ATGGCTTCATCTATTTTTTCGTGCGAGGATGTAAGAGAATGGATGATGAAGGAGGGGTTTAAGGATTATGCTGACTTTTTCTATGATCAAGTAATTGATGGTGAATCACTTAAGTGTATGAATGAAGAAACACTTAAGACCCTTGTGCCCCTTGCCGGTCCACGTTTGAAGATATTGGACAAGATAAAGAAGTTGAATGCTCAGGAAAGCATGAGGTCCTCTGGATTGCCAACCGTTGTGGTTCCAGAGCCGGAAGAAATTCTGGTTGTCGATAAAGGTGAAACATCAGGCACAAGTGACAAAAGTTCTAAAAGATCCATTGAGGCGACACGACGTCAGAGACTAGCTAGAAATAAGAGAAAACGAGCCCAGAAAAGGCAATTGAAGAAAGATGACCATAAAGAGTTAATGCAAGAAAAATGCAAAAGACTGGCAACAGAAGAAAAATTGGTTTTGGCTGAAAAAAATAAAGAGAAATTTTACCAAATGTGGCGTCAAACAGAGCGTGAAAAAGAAAAATTATTCCAGTTACAGATGACTATGGACAAGAAATCAACCAATAATAAGCTGATTTCAAATTATTCTTCAAAGAATGCTGTTGGCATAACATCCTTGCTGGAGATTCCAAGGGAAGCAATAAATTTGGAAGGTGATTCCAAAGATATAACCCTGGGTGAAGGCAAATTTGGCAAAGTAACACTTGCTTCTTACAGAGGAATGCCTGTTGCTGTCAAGCAATTTAATGCTGATGTTTCCCTATCAGAAATTAAACATGAGGCAAACATTATTTCTGCATTTAACCACTTAAATTTGCCAGTTTTGTTTGGAATTTCATGTCAGGAAAAACCCTATCTGCTGATGTTTCAATTCTATGGAGTAGCAGGGAAAGCCATGACTTTAAATGACTGTTGTCATCCTTCCTCTGTGCCACTGAAGACTTCAAATTGGTTGAATGCAGTGGTACAACTGTGCGATGCACTGAGGTATATTCACAGCCAAAAGATTCTGCACAATGACATAAAATCTGATAATATTGTAATGGTGAAAGAGGAAAATGAAGAATTGCTTTACTCTCCTATCTTGGTTGACTTTGGCAAATCTAAGCATTTTTCAGAGGTCCGAAAAAAGCAATTAACTGAGAGGGAAAAAGAAATCTACAGAAAGAGACATTTCCATGTGGCACCTGAAGTTATTGAAGGATTGCATGCACCATCAGTGAAAAGTGATGTGTATTCAATTGGGCTTGTATTCTATAGGGTTTACAAACTAGTCAAGGTCAAGGTTCTGAAAGACTTATGCAAAAAGTGTTTAGCACTATACAACGAGAGATGTACATCTCAAGAACTTTTGGAAATGGCGGGCACATTGTTGCACGATCACTACCCAGAACCCAAACCTGCAAAAAGTCTTGAAAAAAAGAACTGGCCAAATAACTTTGAACTTCCAAAGACTTTTGCACCAATTGTGACGCAGGCTTTGGAGAAGAAAGTGTATATGGAAAAGAAGGCCCGCACCAAATTCATACAAGCCATATATGATGCCATCTGCCAATACACCATTTCCCCAACACCTGACCAAAGAAGACAAGTCTGCCGCAAAATAATATCTGACTATCCATTTCAAGCGGATGTAGATGGAGGCTTTGAAAGTTGGTATAGAATACTCACTGACAAATGTAAAAACGAATGCCGAGGTGACGTCCCAGACCCAGGGGTTATGTCTCGTAAACGTAAAAACGCAGATGGCAGCAAGAAGCAGCCAAAACCTGAAAAAGGACTGCGGAGAGGTATTGTTAAATGGGCCCCACCACACATTGAGGGGGAAGATAAAGCTTCGCATGACAAACACGAAAGCTGGATGCAAACAGAATCTAAAAAAAAGGACAAGAGATATGACATTGTCACACGAAAAATGGATCTAACATATTCCTTCAGGAGGGAATACTTGACTGGACAGCCAGTGCCTCTTCTTCAAATCAAGGAGAAATACCCTTTTCTTTTTGATCAAAAAGAGGTCAAGAATGAATATTGCAGGCTGATGGCTGACAAAGAGGCTGCCAATCAAATTGAAGAAAACTTTATTTTGATGGGGCAAAAGATAATTGAATATGCCAGAAGGAAAAATATAAAGGGGTCACAACCCCTTCTCAGCCTCCTGGAACCTGACAAGGACGATAGTGAAAACATGCCAACATCAGAGGACCAAGCACTAGTTGGATTGTGTCTTTTGCCTCTCATTCTGGAACGGCCACCAAAAAGTGGACTCCAGCCTTCACACTTTCTTTACCAGAGTGGCAGTGATGCAAAAGAAGTGGCGAAAGGAACAAGGGAGGGAATGCCTCCCTTTATTATCTTTGAAGGAGAAGTGCACTCCCCAAACGATATATTTATTAGTGGGGAGCAGGATCTCCTTTTGAAGATAAATGGGGGGCATACCAGTGCCCTGATCACCTTGATGTTATTATATTTTGTATGTAATATACAATACCCCAAGGAGTGTATGAACGTTTATATATTCCTTCAGAGATATGTGCTGAAAGTATACGACAGTGTAAAACTTCCCGCGAAAGTAATGCAATTCTTAAACGAATTGAACTGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0C5E2	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-1.2 PE=2 SV=3
P27448	MAP/microtubule affinity-regulating kinase 3 OS=Homo sapiens OX=9606 GN=MARK3 PE=1 SV=5
Q03141	MAP/microtubule affinity-regulating kinase 3 OS=Mus musculus OX=10090 GN=Mark3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001179 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31025 all species →	SI:CH211-196P9.1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.1779.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.