Detailed information of evm.model.Ap9.1930 in Astrangia poculata

Genomic Location: Ap9:21162665...21172502
NR annotation: KAJ7378931.1, Nucleoporin-like protein 2 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZI22Nucleoporin NUP42 OS=Gallus gallus OX=9031 GN=NUP42 PE=2 SV=1
Q8CIC2Nucleoporin NUP42 OS=Mus musculus OX=10090 GN=Nup42 PE=2 SV=1
Q5RB98Nucleoporin NUP42 OS=Pongo abelii OX=9601 GN=NUP42 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006618 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18044
all species →		zf-CCCH_4CCCH-type zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036855
all species →		Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR000571
all species →		DomainZinc finger, CCCH-typeInterproscan
IPR051767
all species →		FamilyNucleoporin NUP42 domain-containing proteinInterproscan
IPR041367
all species →		DomainE3 ligase, CCCH-type zinc fingerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46527
all species →		NUCLEOPORIN-LIKE PROTEIN 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14321NUPL2, NUP42, CG1; nucleoporin-like protein 2-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP