Gene detail

Detailed information of evm.model.Ap9.1961 in Astrangia poculata

Genomic Location: Ap9:21451811...21463397
NR annotation: XP_027043137.1, protein eyes shut homolog [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.1961

atgagtactgttcttgtttcatcatctgtagtgcccacgatgccgcctacgccaactactccgcctttaataaaccaaacatgtattcacaacccttgcaacaatgggacatgctttaacgagtcctacataggaaacaagttccgctgtgaatgtccttatccaactgttggacctgtttgtacaagtgagtacaatcttcactttccagcctttggaaggaattcctatcttgtatacaggagtatttcatttaataatgaagaaaacaggattgacataactttccagacaaatgctagtgatggactgcttatctttgctgctgaccataaagaacgaggagattttatccagctgcgtgttgtgggtggaaaactggagttcagatttgatcctggtgacagcttagtatatatccgaagcaatgaaatggtcaatactggtgaaatagttacagcgacagtcacttatgtcagcaatgcacaaacagcttttggcaccctacaagttggcaatggtgtacaacgtaggggtgaagtcactggaagactccgggggatacaactctacaccaactggtatgtaggaggcgtccctcctaacttcaatataatcagcaaaactaaaggcaatgctgctccgtcgtcgtcctttgttgggtctatcagagatgtgcaagttaatggagaaactctcaactttgcagatgctaaagactggtttaacatcaatgaaggtgacatgccggcatgccaaagaatgccgtgcaagaacaacggagtatgcatcccgcatgaggacaacttgcatgattacagctgtaactgcactgaaggattttcgggaaagaactgtgaaactcacactgcttgtcagtcagagaattgtaatggtggagagtgtataccaaaagattccaatcctcaagactttgtttgtctttgtcctctgggaagagtaggagtgcaatgccaaacagtgatcaacattacagttccattgttcactattgtacaagatttcccatcatacctagagtacccatcacccagagatgcagtgaacagcttccatgtaacattccagtttaagctcgacaactcttccacatcttggaatgacagcctgttggtttacagtgcacagaataaatttctaggcagtggagacgatttttttgcagttggattaaagaacaacatggtgctgttgcaatataatcttggtagtggaagtgctcggatttacagtaatccgctggacccaagtaaagagtggcatttggtggtcgctggacggaatgggcgtgacggctggctttatgttgatagtcagcagcgtaaagaaggcaagtcagttccccccctggttggacttaacctgtttgaaccactttatatcggtggcattcctgatccgcgccagcttccaagtgttctggagttcaaaagtggagggtttcatggctctatttacgatgtagccattaaatttgatgttagaacaccattcatccagctctcaacttcaacaagtgcgcaagactcgtccaaagagtgggctgtagtcaaaggaaggaatgtcggaaatgagagctatgatgaatgttcttcccgcacgccgccatgttccaataatggaacctgccagcgagaaggagcgacatacctgtgttcctgtccaccgcattgggctggtctgtactgcaccagtcgacgtgtgccgtgctatgggtatgataacccttgtgttagtggtacttgtcgtccagacgggcaggatattaagtgtgattgtccattggggaaaacaggacaaacttgcaatcaagatatttcaatccaaacaccactgttccagaatttctcatacatgctgtttgcaaagacggacatcagatctagtacccagatcaccatcacgttcaagcccttggcactcaatggcatcctgttttatgtgtcgtatgatgatcagagcacaacaggcgacttcttgtcgattattctacacaatgggtttgttaagttgagatatgaccttggcaaaggtgtcggcgaggcaaagagcaacgtaacagtcagtcttaacacgtggcacacagtacgagcgagtcgaactgcaaaaactggacgtttgatcgtgaatagtggtgttcctgtgaatgtgacgtctcctgggagtgctgtggctcttgacgttcattccaatttctacttgggaggagtcagccagttgtcgaatgtaaatccgaatgctgtcgataatgatgcttcatttgtgcaagattttacgggctgcattgatcatttcgaggtaaatggcatcctttactttcagccaagcactggtgctttagaaggaagaaatattgccaactgccctgatcttatcagccagcatgcagcctag

Transcript

evm.model.Ap9.1961

GTCAAGATATCTCCGTCAATGAGTACTGTTCTTGTTTCATCATCTGTAGTGCCCACGATGCCGCCTACGCCAACTACTCCGCCTTTAATAAACCAAACATGTATTCACAACCCTTGCAACAATGGGACATGCTTTAACGAGTCCTACATAGGAAACAAGTTCCGCTGTGAATGTCCTTATCCAACTGTTGGACCTGTTTGTACAAGTGAGTACAATCTTCACTTTCCAGCCTTTGGAAGGAATTCCTATCTTGTATACAGGAGTATTTCATTTAATAATGAAGAAAACAGGATTGACATAACTTTCCAGACAAATGCTAGTGATGGACTGCTTATCTTTGCTGCTGACCATAAAGAACGAGGAGATTTTATCCAGCTGCGTGTTGTGGGTGGAAAACTGGAGTTCAGATTTGATCCTGGTGACAGCTTAGTATATATCCGAAGCAATGAAATGGTCAATACTGGTGAAATAGTTACAGCGACAGTCACTTATGTCAGCAATGCACAAACAGCTTTTGGCACCCTACAAGTTGGCAATGGTGTACAACGTAGGGGTGAAGTCACTGGAAGACTCCGGGGGATACAACTCTACACCAACTGGTATGTAGGAGGCGTCCCTCCTAACTTCAATATAATCAGCAAAACTAAAGGCAATGCTGCTCCGTCGTCGTCCTTTGTTGGGTCTATCAGAGATGTGCAAGTTAATGGAGAAACTCTCAACTTTGCAGATGCTAAAGACTGGTTTAACATCAATGAAGGTGACATGCCGGCATGCCAAAGAATGCCGTGCAAGAACAACGGAGTATGCATCCCGCATGAGGACAACTTGCATGATTACAGCTGTAACTGCACTGAAGGATTTTCGGGAAAGAACTGTGAAACTCACACTGCTTGTCAGTCAGAGAATTGTAATGGTGGAGAGTGTATACCAAAAGATTCCAATCCTCAAGACTTTGTTTGTCTTTGTCCTCTGGGAAGAGTAGGAGTGCAATGCCAAACAGTGATCAACATTACAGTTCCATTGTTCACTATTGTACAAGATTTCCCATCATACCTAGAGTACCCATCACCCAGAGATGCAGTGAACAGCTTCCATGTAACATTCCAGTTTAAGCTCGACAACTCTTCCACATCTTGGAATGACAGCCTGTTGGTTTACAGTGCACAGAATAAATTTCTAGGCAGTGGAGACGATTTTTTTGCAGTTGGATTAAAGAACAACATGGTGCTGTTGCAATATAATCTTGGTAGTGGAAGTGCTCGGATTTACAGTAATCCGCTGGACCCAAGTAAAGAGTGGCATTTGGTGGTCGCTGGACGGAATGGGCGTGACGGCTGGCTTTATGTTGATAGTCAGCAGCGTAAAGAAGGCAAGTCAGTTCCCCCCCTGGTTGGACTTAACCTGTTTGAACCACTTTATATCGGTGGCATTCCTGATCCGCGCCAGCTTCCAAGTGTTCTGGAGTTCAAAAGTGGAGGGTTTCATGGCTCTATTTACGATGTAGCCATTAAATTTGATGTTAGAACACCATTCATCCAGCTCTCAACTTCAACAAGTGCGCAAGACTCGTCCAAAGAGTGGGCTGTAGTCAAAGGAAGGAATGTCGGAAATGAGAGCTATGATGAATGTTCTTCCCGCACGCCGCCATGTTCCAATAATGGAACCTGCCAGCGAGAAGGAGCGACATACCTGTGTTCCTGTCCACCGCATTGGGCTGGTCTGTACTGCACCAGTCGACGTGTGCCGTGCTATGGGTATGATAACCCTTGTGTTAGTGGTACTTGTCGTCCAGACGGGCAGGATATTAAGTGTGATTGTCCATTGGGGAAAACAGGACAAACTTGCAATCAAGATATTTCAATCCAAACACCACTGTTCCAGAATTTCTCATACATGCTGTTTGCAAAGACGGACATCAGATCTAGTACCCAGATCACCATCACGTTCAAGCCCTTGGCACTCAATGGCATCCTGTTTTATGTGTCGTATGATGATCAGAGCACAACAGGCGACTTCTTGTCGATTATTCTACACAATGGGTTTGTTAAGTTGAGATATGACCTTGGCAAAGGTGTCGGCGAGGCAAAGAGCAACGTAACAGTCAGTCTTAACACGTGGCACACAGTACGAGCGAGTCGAACTGCAAAAACTGGACGTTTGATCGTGAATAGTGGTGTTCCTGTGAATGTGACGTCTCCTGGGAGTGCTGTGGCTCTTGACGTTCATTCCAATTTCTACTTGGGAGGAGTCAGCCAGTTGTCGAATGTAAATCCGAATGCTGTCGATAATGATGCTTCATTTGTGCAAGATTTTACGGGCTGCATTGATCATTTCGAGGTAAATGGCATCCTTTACTTTCAGCCAAGCACTGGTGCTTTAGAAGGAAGAAATATTGCCAACTGCCCTGATCTTATCAGCCAGCATGCAGCCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8JI71	Protein eyes shut homolog OS=Danio rerio OX=7955 GN=eys PE=1 SV=2
B4F785	Pikachurin OS=Rattus norvegicus OX=10116 GN=Egflam PE=2 SV=1
Q63207	Coagulation factor X OS=Rattus norvegicus OX=10116 GN=F10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004183 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00054 all species →	Laminin_G_1	Laminin G domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR050372 all species →	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15036 all species →	PIKACHURIN-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.1961.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.