Genomic Location: Ap9:2073423...2081189
NR annotation: XP_027041223.1, vitamin K-dependent gamma-carboxylase-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap9.209 |
| Transcript |
| evm.model.Ap9.209 |
| Protein |
| evm.model.Ap9.209 |
| UniProt accession | Description |
|---|---|
| Q9MYY3 | Vitamin K-dependent gamma-carboxylase OS=Delphinapterus leucas OX=9749 GN=GGCX PE=2 SV=1 |
| Q9QYC7 | Vitamin K-dependent gamma-carboxylase OS=Mus musculus OX=10090 GN=Ggcx PE=1 SV=1 |
| Q9GL59 | Vitamin K-dependent gamma-carboxylase OS=Ovis aries OX=9940 GN=GGCX PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003929 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05090 all species → | VKG_Carbox | Vitamin K-dependent gamma-carboxylase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007782 all species → | Family | Vitamin K-dependent gamma-carboxylase | Interproscan |
| IPR011051 all species → | Homologous_superfamily | RmlC-like cupin domain superfamily | Interproscan |
| IPR011020 all species → | Domain | HTTM | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12639 all species → | VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008488 all species → | Molecular Function | gamma-glutamyl carboxylase activity | Interproscan |
| GO:0017187 all species → | Biological Process | peptidyl-glutamic acid carboxylation | Interproscan |
| GO:0019842 all species → | Molecular Function | vitamin binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10106 | GGCX; vitamin K-dependent gamma-carboxylase | EC:4.1.1.90 | Ubiquinone and other terpenoid-quinone biosynthesis | ko00130 | deepkoala |
Transcript abundance of evm.model.Ap9.209 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
