Gene detail

Detailed information of evm.model.Ap9.2112 in Astrangia poculata

Genomic Location: Ap9:22977500...22987722
NR annotation: CAH3143824.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.2112

atggacgcaaacaagaaatcttcctccaaatggggcgacgttattcacaaaggttcttcaattctctactttatttccatgttgttgattatggcgctgtttttgcggatggaatcgataaacaggaaaacggagatgaatgaattgcgtattacgaatgtcgaaaagcgcacagagatacgattgccgcagacaacagatcacaaagacgaaatggaaacgccagagagtgacgacgatgatgacgacgatgatgatgacgatgatggtgatgataatgatgatgagaagaaatgtcgaaacggacatattgtcactcaaagtaaacgacatcttcctcaagatgctcaaaatgccatggaagcacatgatcatcacaagaataaaagagatgcacaaacacaaaatgtgcaaacagtatctcttcagcaaatccgtaaagagattgacaggaaattgagtcaagtttgcagtacaagaggcaagatttgccaagttggccagccgggacccccgggagaccgtggagctcacggatatcctggatacaagggagaaaaaggagcccctgggataccaggcccacaaggacctttgggtcctacaggaactcaaggcccaaatggaaagcgaggaccacaaggaccccagggaataaagggtgaaatgggcgaggaaggacccgttggctcccctggggtaaaaggagatgttgggcctatgggccgtacaggaataaagggcttgattggcgaaagagggaacaaaggcatcaagggctcgatgggactccaaggcccgaaaggagaatgcatcattcccccaaaaatcaaggtatttccagtgtccttggatgtctttatcaatgaaacggcgacattttactgctgggttgatggtcaaacatctaaaaagataacatggagaaagcttggaggtaccttcttgaaagataccgctgtgaaagatgatgtcttgcgaatcaacaatgtacaaaggtctcatgttggatcatacatgtgcacggcatacacaggtcatggaattctaaaggctgtttgtatgttacgtacaaaagaaccgccggttattactagcaaacctccctcaaaggtcgttgttgttcctggatctcctttgagtctctgttgtgaagcaacaggctctcctcctcccaacattaagtggtcacgtgcagatcagtcttttgtttcaacactggcttttcaggacatgacgagcttagccctcaaaaaaaaattctgtccaggaggtcttttaatcttgtacataacttgtcaccgcatgccaggaaatctatacgacattggatatccgacggacagccgaaagtataagtggactgtgggtatggccaatccagccccaattttctctttagaatctgctgcttactggttcttgatctcctcgctgccacagctactcgttgcgaattttcgcaggtcaccaaaatatgttaaagatacgtctaagacaactgtttatcaatgtctggatcttctcattgtgtttaattcctgcgaagaggttattgcaaagttctcatttaaagaatctggaagctaccttctgaacaccatctccgtcagatatatgagcgagctcaccccggcagctgtaccgggacgagatcttcaccccgatacgaaaatttatttcatgccacgtgaacgagcgtactgtgaaattacggctgatcgtgaaggatggactttaatcgcccgattctcaaacaacgacaacaaaaactggatgttggacgatggtagctggtggtatgaccaacgaattgccattggatcagcaaatagtccttcaattaacactgacatgatctcaccagccttttggttggccagtggcagtgagtttaagatcacgcgcagtgatgaccccagtcacactcctttgttacagaccacaggtaactgtttggctggacaaacattccgatctaaaatcacaagttatggcgactttagaaatggcaaagtttgggccagtgatgagtgtctgggaagctgcacggttcaatatggcggtcagtacaagtcaacagacgggtttcaacaggctgagtgcagtggaaacatccaaagcgccaacaagatcggcttctggtgtgactgggatggtggtgatggatcagtgatgatgattggtggaggaggaacctgttcacgtgctgatcatgggattggaataacagaaagtgacgcggcttcttttgttgacgctggaggcagtgaaactgaatatgactttggttatgatgctaatacaggaagtgctccatcccagtcctactcactaaatctgtggatccgctga

Transcript

evm.model.Ap9.2112

ATGGACGCAAACAAGAAATCTTCCTCCAAATGGGGCGACGTTATTCACAAAGGTTCTTCAATTCTCTACTTTATTTCCATGTTGTTGATTATGGCGCTGTTTTTGCGGATGGAATCGATAAACAGGAAAACGGAGATGAATGAATTGCGTATTACGAATGTCGAAAAGCGCACAGAGATACGATTGCCGCAGACAACAGATCACAAAGACGAAATGGAAACGCCAGAGAGTGACGACGATGATGACGACGATGATGATGACGATGATGGTGATGATAATGATGATGAGAAGAAATGTCGAAACGGACATATTGTCACTCAAAGTAAACGACATCTTCCTCAAGATGCTCAAAATGCCATGGAAGCACATGATCATCACAAGAATAAAAGAGATGCACAAACACAAAATGTGCAAACAGTATCTCTTCAGCAAATCCGTAAAGAGATTGACAGGAAATTGAGTCAAGTTTGCAGTACAAGAGGCAAGATTTGCCAAGTTGGCCAGCCGGGACCCCCGGGAGACCGTGGAGCTCACGGATATCCTGGATACAAGGGAGAAAAAGGAGCCCCTGGGATACCAGGCCCACAAGGACCTTTGGGTCCTACAGGAACTCAAGGCCCAAATGGAAAGCGAGGACCACAAGGACCCCAGGGAATAAAGGGTGAAATGGGCGAGGAAGGACCCGTTGGCTCCCCTGGGGTAAAAGGAGATGTTGGGCCTATGGGCCGTACAGGAATAAAGGGCTTGATTGGCGAAAGAGGGAACAAAGGCATCAAGGGCTCGATGGGACTCCAAGGCCCGAAAGGAGAATGCATCATTCCCCCAAAAATCAAGGTATTTCCAGTGTCCTTGGATGTCTTTATCAATGAAACGGCGACATTTTACTGCTGGGTTGATGGTCAAACATCTAAAAAGATAACATGGAGAAAGCTTGGAGGTACCTTCTTGAAAGATACCGCTGTGAAAGATGATGTCTTGCGAATCAACAATGTACAAAGGTCTCATGTTGGATCATACATGTGCACGGCATACACAGGTCATGGAATTCTAAAGGCTGTTTGTATGTTACGTACAAAAGAACCGCCGGTTATTACTAGCAAACCTCCCTCAAAGGTCGTTGTTGTTCCTGGATCTCCTTTGAGTCTCTGTTGTGAAGCAACAGGCTCTCCTCCTCCCAACATTAAGTGGTCACGTGCAGATCAGTCTTTTGTTTCAACACTGGCTTTTCAGGACATGACGAGCTTAGCCCTCAAAAAAAAATTCTGTCCAGGAGGTCTTTTAATCTTGTACATAACTTGTCACCGCATGCCAGGAAATCTATACGACATTGGATATCCGACGGACAGCCGAAAGTATAAGTGGACTGTGGGTATGGCCAATCCAGCCCCAATTTTCTCTTTAGAATCTGCTGCTTACTGGTTCTTGATCTCCTCGCTGCCACAGCTACTCGTTGCGAATTTTCGCAGGTCACCAAAATATGTTAAAGATACGTCTAAGACAACTGTTTATCAATGTCTGGATCTTCTCATTGTGTTTAATTCCTGCGAAGAGGTTATTGCAAAGTTCTCATTTAAAGAATCTGGAAGCTACCTTCTGAACACCATCTCCGTCAGATATATGAGCGAGCTCACCCCGGCAGCTGTACCGGGACGAGATCTTCACCCCGATACGAAAATTTATTTCATGCCACGTGAACGAGCGTACTGTGAAATTACGGCTGATCGTGAAGGATGGACTTTAATCGCCCGATTCTCAAACAACGACAACAAAAACTGGATGTTGGACGATGGTAGCTGGTGGTATGACCAACGAATTGCCATTGGATCAGCAAATAGTCCTTCAATTAACACTGACATGATCTCACCAGCCTTTTGGTTGGCCAGTGGCAGTGAGTTTAAGATCACGCGCAGTGATGACCCCAGTCACACTCCTTTGTTACAGACCACAGGTAACTGTTTGGCTGGACAAACATTCCGATCTAAAATCACAAGTTATGGCGACTTTAGAAATGGCAAAGTTTGGGCCAGTGATGAGTGTCTGGGAAGCTGCACGGTTCAATATGGCGGTCAGTACAAGTCAACAGACGGGTTTCAACAGGCTGAGTGCAGTGGAAACATCCAAAGCGCCAACAAGATCGGCTTCTGGTGTGACTGGGATGGTGGTGATGGATCAGTGATGATGATTGGTGGAGGAGGAACCTGTTCACGTGCTGATCATGGGATTGGAATAACAGAAAGTGACGCGGCTTCTTTTGTTGACGCTGGAGGCAGTGAAACTGAATATGACTTTGGTTATGATGCTAATACAGGAAGTGCTCCATCCCAGTCCTACTCACTAAATCTGTGGATCCGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
G5EBF1	Protein sax-3 OS=Caenorhabditis elegans OX=6239 GN=sax-3 PE=2 SV=1
P98160	Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000275 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050632 all species →	Family	Nematode Cuticular Collagen	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24637 all species →	COLLAGEN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap9.2112. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.2112.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.