Gene detail

Detailed information of evm.model.Ap9.212.1.5f15e60a in Astrangia poculata

Genomic Location: Ap9:2158154...2181343
NR annotation: CAH3150959.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.212.1.5f15e60a

atgaggtcacccagcagtaaagctgaaacagcaggaattgctgaaggattgttggtaagatcgatcaacaatgctaactgtgaagattggacgcacagcgatgctctcaacagtatcaaaaggactggatccatgttaaaattgattctctgcaaaaaatcaactccatccccagaaccaaattcaactagcggcaattttttcccatcaactacgtcaaaaacaactgatgacatcaacacaggcaggccttctcatgtctccaaggcaacattcaagccatcatcttcaaatgaagtgctgtcttatgcgacgatgcccagaggtggtgaaaaaaaggatacagatataaagagatggagagatgttgaagaaaacaataacgaagatgctttcatgtcacagaaagatcatttatcagacggtaatgaatggaaccctgacatcatatcaggcgtggttcgacctccagagcaaatcaaattagttcatggtattgaggctattcgatctgtgtcaagttcctccacatcttcagaacctagtgttcaagttagagcaccagtggatccgcggggatttaccgacaaaccacgtcccattggacgaggaggaagaaggttgacgtcaggttctattggctctgaagaagagttcaatatggcaaatggtgatgcaagcagctcggactcagctccttcagtgacaaacagacctgccttgcagcagtttaggaagcaaaaagagcaggcagcttttgaagccacaaaggaacctaaacctgtcaaagtagtagcgccaccaattcgaagcaaacctcccaggaaatacagcgacgagcacaagatttcagagacaactaacacaggacctcatcgcccatcaatccaaaggggaggaaaatggtacaaagaaatgttcaaagaattacattcaaatgcaggaacttcttccaatctgtcggggttactcgctagtgacgttgccaggggaaccgtaagagattatgaaggcggttctggctcatcatcaccgccaaggagtgcttcccccacacctgactacagagacaatgaggtgtttggcagaaagacagattatgttaatgaagctcctgtgaggaactcatacacaagtaacgtatcttcacaacccactccatcgtggtctagcgacgagggtgaacggaaaacctcctggcgagagactggcgagaggagaccgtctcggctcagccaaagccatgtcccagcctggtacaaggatatgcagaaaggagttgaggtccctgtgcaaacgattgaagaaccagagtcttacattgttcaaaagaaaccttcttatgcaaatatcggtcaagagagaagatttgaggagccggtgtcatcagcgcctaccactatgaacgtgtctccatcttacctagaccagagaagatctccaggatccgtcacagttcaaatggaagagaaaaatcaacctcccagtgcttcaagtctgtacgagagtcgcttccggggaagaccaccgggtccaacacgaactgcgtcggaagaacttcaagtccgacaacagccgccatcagatgaagacgtgttgagaagacgagaggaagaggcggcgcgcaggagaagggaggaagaggaacagaggcggagggaggaagaagagaggagactggaagaggaagaggaaatgatgaggaggaggcaggaggaagaggagcggctgagaagagagtacgaggctgagctggccaggagaaggagggatgaggaggaagctgctagaagagaagctagtaaaccacagtttttggccagggctttgtacaacttccagggtcaaacggagaacgaactgtcgttcagaaagggtgacatcatcaacgtaagaaggcaagtcgacaagaactgggttgatggagaattaaatggaaggcgtggaatattccctacaaattatgtggagatccgacctgtggaagaggaggaggaagaggaaccacccccacccccacccactcagaagcaagtaccacgtgtccaagttagtgttgtacaacagcaacatacgcagccgccacaacagcgtcagccaacagcttacactcagccccaggaacagcgccagccaacagcttacactcagccccaggaacagcgccagccaacagcttacactcagccccaggaacagcgtcagccaacagcttacactcagccccaggaacagcgccagccaacagcttatgctcagccccaggctcaacagacctcaccgcggcctgctgctcaaccagcaacgcaatctgtgactgtggagggggaggcacgggtacggtacagcttcaaagctgagacgacgagagaactgccgtgtagcaagggagatattatagctttagttcgtaaggtggatgccaattggtacgagggacgggtgggtgacagaaaaggaatagtaccttcaagttacttagaggtcttcagagaacctgaggttaaagtaattcgtcaagatcaaatacagccagttcagtcagctcgcgtggagcaggctcccgatttcggaagaccagagcccagttacgatcaacgacagcagcaatcaagaagtcctccaggggctatgtacggaggccaggccgctcctcccaagcacacgcaagtgaaatatattgaggaaccagaagagcctcgcttcagtgctggtggaattgttgcgcatgcagtaatcgatgagccaacaagaataggtcacgagcaaggagaaaggtaccgcgccttgtttagttacgagcccgtcaatgaagacgagcttcgtcttgaagaaggcgatgaagttattgttttggagaaatgcgatgacggctggtatgtgggcacgtctgctcgcacccattcatttggaacgtttcctggaaattacgtggaaagagttgcttattaa

Transcript

evm.model.Ap9.212.1.5f15e60a

ATGAGGTCACCCAGCAGTAAAGCTGAAACAGCAGGAATTGCTGAAGGATTGTTGGTAAGATCGATCAACAATGCTAACTGTGAAGATTGGACGCACAGCGATGCTCTCAACAGTATCAAAAGGACTGGATCCATGTTAAAATTGATTCTCTGCAAAAAATCAACTCCATCCCCAGAACCAAATTCAACTAGCGGCAATTTTTTCCCATCAACTACGTCAAAAACAACTGATGACATCAACACAGGCAGGCCTTCTCATGTCTCCAAGGCAACATTCAAGCCATCATCTTCAAATGAAGTGCTGTCTTATGCGACGATGCCCAGAGGTGGTGAAAAAAAGGATACAGATATAAAGAGATGGAGAGATGTTGAAGAAAACAATAACGAAGATGCTTTCATGTCACAGAAAGATCATTTATCAGACGGTAATGAATGGAACCCTGACATCATATCAGGCGTGGTTCGACCTCCAGAGCAAATCAAATTAGTTCATGGTATTGAGGCTATTCGATCTGTGTCAAGTTCCTCCACATCTTCAGAACCTAGTGTTCAAGTTAGAGCACCAGTGGATCCGCGGGGATTTACCGACAAACCACGTCCCATTGGACGAGGAGGAAGAAGGTTGACGTCAGGTTCTATTGGCTCTGAAGAAGAGTTCAATATGGCAAATGGTGATGCAAGCAGCTCGGACTCAGCTCCTTCAGTGACAAACAGACCTGCCTTGCAGCAGTTTAGGAAGCAAAAAGAGCAGGCAGCTTTTGAAGCCACAAAGGAACCTAAACCTGTCAAAGTAGTAGCGCCACCAATTCGAAGCAAACCTCCCAGGAAATACAGCGACGAGCACAAGATTTCAGAGACAACTAACACAGGACCTCATCGCCCATCAATCCAAAGGGGAGGAAAATGGTACAAAGAAATGTTCAAAGAATTACATTCAAATGCAGGAACTTCTTCCAATCTGTCGGGGTTACTCGCTAGTGACGTTGCCAGGGGAACCGTAAGAGATTATGAAGGCGGTTCTGGCTCATCATCACCGCCAAGGAGTGCTTCCCCCACACCTGACTACAGAGACAATGAGGTGTTTGGCAGAAAGACAGATTATGTTAATGAAGCTCCTGTGAGGAACTCATACACAAGTAACGTATCTTCACAACCCACTCCATCGTGGTCTAGCGACGAGGGTGAACGGAAAACCTCCTGGCGAGAGACTGGCGAGAGGAGACCGTCTCGGCTCAGCCAAAGCCATGTCCCAGCCTGGTACAAGGATATGCAGAAAGGAGTTGAGGTCCCTGTGCAAACGATTGAAGAACCAGAGTCTTACATTGTTCAAAAGAAACCTTCTTATGCAAATATCGGTCAAGAGAGAAGATTTGAGGAGCCGGTGTCATCAGCGCCTACCACTATGAACGTGTCTCCATCTTACCTAGACCAGAGAAGATCTCCAGGATCCGTCACAGTTCAAATGGAAGAGAAAAATCAACCTCCCAGTGCTTCAAGTCTGTACGAGAGTCGCTTCCGGGGAAGACCACCGGGTCCAACACGAACTGCGTCGGAAGAACTTCAAGTCCGACAACAGCCGCCATCAGATGAAGACGTGTTGAGAAGACGAGAGGAAGAGGCGGCGCGCAGGAGAAGGGAGGAAGAGGAACAGAGGCGGAGGGAGGAAGAAGAGAGGAGACTGGAAGAGGAAGAGGAAATGATGAGGAGGAGGCAGGAGGAAGAGGAGCGGCTGAGAAGAGAGTACGAGGCTGAGCTGGCCAGGAGAAGGAGGGATGAGGAGGAAGCTGCTAGAAGAGAAGCTAGTAAACCACAGTTTTTGGCCAGGGCTTTGTACAACTTCCAGGGTCAAACGGAGAACGAACTGTCGTTCAGAAAGGGTGACATCATCAACGTAAGAAGGCAAGTCGACAAGAACTGGGTTGATGGAGAATTAAATGGAAGGCGTGGAATATTCCCTACAAATTATGTGGAGATCCGACCTGTGGAAGAGGAGGAGGAAGAGGAACCACCCCCACCCCCACCCACTCAGAAGCAAGTACCACGTGTCCAAGTTAGTGTTGTACAACAGCAACATACGCAGCCGCCACAACAGCGTCAGCCAACAGCTTACACTCAGCCCCAGGAACAGCGCCAGCCAACAGCTTACACTCAGCCCCAGGAACAGCGCCAGCCAACAGCTTACACTCAGCCCCAGGAACAGCGTCAGCCAACAGCTTACACTCAGCCCCAGGAACAGCGCCAGCCAACAGCTTATGCTCAGCCCCAGGCTCAACAGACCTCACCGCGGCCTGCTGCTCAACCAGCAACGCAATCTGTGACTGTGGAGGGGGAGGCACGGGTACGGTACAGCTTCAAAGCTGAGACGACGAGAGAACTGCCGTGTAGCAAGGGAGATATTATAGCTTTAGTTCGTAAGGTGGATGCCAATTGGTACGAGGGACGGGTGGGTGACAGAAAAGGAATAGTACCTTCAAGTTACTTAGAGGTCTTCAGAGAACCTGAGGTTAAAGTAATTCGTCAAGATCAAATACAGCCAGTTCAGTCAGCTCGCGTGGAGCAGGCTCCCGATTTCGGAAGACCAGAGCCCAGTTACGATCAACGACAGCAGCAATCAAGAAGTCCTCCAGGGGCTATGTACGGAGGCCAGGCCGCTCCTCCCAAGCACACGCAAGTGAAATATATTGAGGAACCAGAAGAGCCTCGCTTCAGTGCTGGTGGAATTGTTGCGCATGCAGTAATCGATGAGCCAACAAGAATAGGTCACGAGCAAGGAGAAAGGTACCGCGCCTTGTTTAGTTACGAGCCCGTCAATGAAGACGAGCTTCGTCTTGAAGAAGGCGATGAAGTTATTGTTTTGGAGAAATGCGATGACGGCTGGTATGTGGGCACGTCTGCTCGCACCCATTCATTTGGAACGTTTCCTGGAAATTACGTGGAAAGAGTTGCTTATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60504	Vinexin OS=Homo sapiens OX=9606 GN=SORBS3 PE=1 SV=2
Q9R1Z8	Vinexin OS=Mus musculus OX=10090 GN=Sorbs3 PE=1 SV=1
Q3UTJ2	Sorbin and SH3 domain-containing protein 2 OS=Mus musculus OX=10090 GN=Sorbs2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002141 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050384 all species →	Family	Endophilin/SH3RF	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14167 all species →	SH3 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.212.1.5f15e60a.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.