Gene detail

Detailed information of evm.model.Ap9.2132 in Astrangia poculata

Genomic Location: Ap9:23188074...23206331
NR annotation: XP_020617411.1, protein argonaute-2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.2132

atgtgcagagggaaggtggcgtctaggaatgaagacattcacaatgttctttcgttatttagagagctggaagatcaaaaccatttggaaattgatcgactggaggttttgaaagagcttttaaaaggtgtcaaagagtggtctctgtttgaaaaagttaaaaaatttgagatcagaaggaaagagtacaagtgtctacttgaacaaatcagccgtgaactggacgaaaacaatcatctggaacagctcattttaatatgcagagggaaaacgtctgtggaaagtgaaggcaacatacacgatgttggcacactgttcaaagaactggaaaggcagaactatttgggatttgctcgccttgattttttaaaagaaattttgactgagacagagaaagaaggcctgctgaagaaagtagaggattttgagaagaaacgaacgagggaggacgagcttgaaaggagaaacgaacatgctggcattgttgcatctgcaagagcttttggtgcaaagataataggagtattgaacataaagacggtgtgcagagtggcagcagcgggcatgacgttactaactctccgtgagctctttcgtcgccggcccatgtatgatcgattagtcacaagcttcaatacctgtgtgcttcctgctaatacacaacttattgacattagccgaggatgtgtgtgtttcacagttcaggcagacaatttaaaggggctcacttctttgtggaatatgtaccaggatggaacacttagggcacgcttgcgtgacttctttgtgacagatgaaatggaaaaacttgccggcggtggagagaacgtggaagtgactgtgaccatcgaggaggaagaatataagaaagcctgcattgagttcataaatgaagctgaaggtaaagcgaagccacctgaaaggggaaatcgaagacactctgattcagtgctatatgtcataccaaaggaagatgaagtgtcactggacatgataaaattaaaacaactggagaacaaatttaaaatcgtgcaagaaggaatggaaattatagagaaagaaatcgagaaacctccactagagtttttggagacaggaagcgccaaggacaaaatgacatcatccaaggaaataatagaagaagaacgaggtcagccttgtgaaacttccgtggctcaacaggaagacaatggattttggccactccacatgcttcgcgaaagagctgcaactgttgctgcgtttgttgtggtcgttgtttcttgtgttgtacttgtggtgagggaggataaaaacagggagagattttatttcctggtctatccagcggctcaacttatccttaatttagtttttaacgaaccagtgcgaagtctgtgtctggtagctgaggagattcaacataaggagacgagatatgaaggaaactggaagcatgttttcaattctttcttcgctttcggatatagccgcagctatgtcttacttgtcaccgtttgtttcacttcgatcttgatcggatattacgaaccttttcctggtgcaggtaacgccattttggctgcactgaacgtttccttgattcggcagtttttccttgaaacatctaagaaaaacgaacgagaaaacgagaatgttgcacgtggactggcttgggcgtactattttggctacttgaagctggtgcttccatacctcgaacataagatcgcagaatcaaaagaatttcgtttgaagattacaagcacgaagctttttatcttgctgccaaaaacctgctacacttatgatgatatcacagacacggatttcagagtgaaatgggccggttatctcccaacgtataaaattataagaagtggaataaaggcacgatcttacaggcatttagtacaccggatagagatgccccgtccagacggaatgatagatgaataccactttgtcttggagtatgctactcctctaatgaccctgtatgacatgtctgtggaggcagattctcccttgagtcgccaagagcgagatcatcaggtggagctgtttatcagaaaactaaaagaaattctggatggctgctctggatgcagagggaagtatgaattagtacctatttcggaaaatgacaaaatagcagatgttttggttgagatgcacaatgctaaaatggagctggatgaacaactgaatagcgacaactga

Transcript

evm.model.Ap9.2132

ATGTGCAGAGGGAAGGTGGCGTCTAGGAATGAAGACATTCACAATGTTCTTTCGTTATTTAGAGAGCTGGAAGATCAAAACCATTTGGAAATTGATCGACTGGAGGTTTTGAAAGAGCTTTTAAAAGGTGTCAAAGAGTGGTCTCTGTTTGAAAAAGTTAAAAAATTTGAGATCAGAAGGAAAGAGTACAAGTGTCTACTTGAACAAATCAGCCGTGAACTGGACGAAAACAATCATCTGGAACAGCTCATTTTAATATGCAGAGGGAAAACGTCTGTGGAAAGTGAAGGCAACATACACGATGTTGGCACACTGTTCAAAGAACTGGAAAGGCAGAACTATTTGGGATTTGCTCGCCTTGATTTTTTAAAAGAAATTTTGACTGAGACAGAGAAAGAAGGCCTGCTGAAGAAAGTAGAGGATTTTGAGAAGAAACGAACGAGGGAGGACGAGCTTGAAAGGAGAAACGAACATGCTGGCATTGTTGCATCTGCAAGAGCTTTTGGTGCAAAGATAATAGGAGTATTGAACATAAAGACGGTGTGCAGAGTGGCAGCAGCGGGCATGACGTTACTAACTCTCCGTGAGCTCTTTCGTCGCCGGCCCATGTATGATCGATTAGTCACAAGCTTCAATACCTGTGTGCTTCCTGCTAATACACAACTTATTGACATTAGCCGAGGATGTGTGTGTTTCACAGTTCAGGCAGACAATTTAAAGGGGCTCACTTCTTTGTGGAATATGTACCAGGATGGAACACTTAGGGCACGCTTGCGTGACTTCTTTGTGACAGATGAAATGGAAAAACTTGCCGGCGGTGGAGAGAACGTGGAAGTGACTGTGACCATCGAGGAGGAAGAATATAAGAAAGCCTGCATTGAGTTCATAAATGAAGCTGAAGGTAAAGCGAAGCCACCTGAAAGGGGAAATCGAAGACACTCTGATTCAGTGCTATATGTCATACCAAAGGAAGATGAAGTGTCACTGGACATGATAAAATTAAAACAACTGGAGAACAAATTTAAAATCGTGCAAGAAGGAATGGAAATTATAGAGAAAGAAATCGAGAAACCTCCACTAGAGTTTTTGGAGACAGGAAGCGCCAAGGACAAAATGACATCATCCAAGGAAATAATAGAAGAAGAACGAGGTCAGCCTTGTGAAACTTCCGTGGCTCAACAGGAAGACAATGGATTTTGGCCACTCCACATGCTTCGCGAAAGAGCTGCAACTGTTGCTGCGTTTGTTGTGGTCGTTGTTTCTTGTGTTGTACTTGTGGTGAGGGAGGATAAAAACAGGGAGAGATTTTATTTCCTGGTCTATCCAGCGGCTCAACTTATCCTTAATTTAGTTTTTAACGAACCAGTGCGAAGTCTGTGTCTGGTAGCTGAGGAGATTCAACATAAGGAGACGAGATATGAAGGAAACTGGAAGCATGTTTTCAATTCTTTCTTCGCTTTCGGATATAGCCGCAGCTATGTCTTACTTGTCACCGTTTGTTTCACTTCGATCTTGATCGGATATTACGAACCTTTTCCTGGTGCAGGTAACGCCATTTTGGCTGCACTGAACGTTTCCTTGATTCGGCAGTTTTTCCTTGAAACATCTAAGAAAAACGAACGAGAAAACGAGAATGTTGCACGTGGACTGGCTTGGGCGTACTATTTTGGCTACTTGAAGCTGGTGCTTCCATACCTCGAACATAAGATCGCAGAATCAAAAGAATTTCGTTTGAAGATTACAAGCACGAAGCTTTTTATCTTGCTGCCAAAAACCTGCTACACTTATGATGATATCACAGACACGGATTTCAGAGTGAAATGGGCCGGTTATCTCCCAACGTATAAAATTATAAGAAGTGGAATAAAGGCACGATCTTACAGGCATTTAGTACACCGGATAGAGATGCCCCGTCCAGACGGAATGATAGATGAATACCACTTTGTCTTGGAGTATGCTACTCCTCTAATGACCCTGTATGACATGTCTGTGGAGGCAGATTCTCCCTTGAGTCGCCAAGAGCGAGATCATCAGGTGGAGCTGTTTATCAGAAAACTAAAAGAAATTCTGGATGGCTGCTCTGGATGCAGAGGGAAGTATGAATTAGTACCTATTTCGGAAAATGACAAAATAGCAGATGTTTTGGTTGAGATGCACAATGCTAAAATGGAGCTGGATGAACAACTGAATAGCGACAACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A2B4SJA1	Stimulator of interferon genes protein 2 OS=Stylophora pistillata OX=50429 GN=STING2 PE=3 SV=1
A0A2B4SII1	Stimulator of interferon genes protein 7 OS=Stylophora pistillata OX=50429 GN=STING7 PE=3 SV=1
A0A2B4SJD2	Stimulator of interferon genes protein 1 OS=Stylophora pistillata OX=50429 GN=STING1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001050 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF01335 all species →	DED	Death effector domain	Domain	Interproscan
PF15009 all species →	TMEM173	Transmembrane protein 173	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001875 all species →	Domain	Death effector domain	Interproscan
IPR038623 all species →	Homologous_superfamily	Stimulator of interferon genes protein, C-terminal domain superfamily	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR029158 all species →	Family	Stimulator of interferon genes protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34339 all species →	STIMULATOR OF INTERFERON GENES PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0002218 all species →	Biological Process	activation of innate immune response	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0016239 all species →	Biological Process	positive regulation of macroautophagy	Interproscan
GO:0032481 all species →	Biological Process	positive regulation of type I interferon production	Interproscan
GO:0035438 all species →	Molecular Function	cyclic-di-GMP binding	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan
GO:0061507 all species →	Molecular Function	2',3'-cyclic GMP-AMP binding	Interproscan
GO:0061709 all species →	Biological Process	reticulophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.2132.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.