Genomic Location: Ap9:24166737...24181642
NR annotation: XP_022788843.1, signal transducing adapter molecule 2-like isoform X1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap9.2238 |
| Transcript |
| evm.model.Ap9.2238 |
| Protein |
| evm.model.Ap9.2238 |
| UniProt accession | Description |
|---|---|
| P70297 | Signal transducing adapter molecule 1 OS=Mus musculus OX=10090 GN=Stam PE=1 SV=3 |
| Q92783 | Signal transducing adapter molecule 1 OS=Homo sapiens OX=9606 GN=STAM PE=1 SV=3 |
| O88811 | Signal transducing adapter molecule 2 OS=Mus musculus OX=10090 GN=Stam2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005290 (this species only) |
| Ubiquitin family | UBD|Other|SH3 · all ubiquitin genes in this species |
| Ubiquitin family | UBD|Alpha-Helix|VHS · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00018 all species → | SH3_1 | SH3 domain | Domain | Interproscan |
| PF00790 all species → | VHS | VHS domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001452 all species → | Domain | SH3 domain | Interproscan |
| IPR003903 all species → | Conserved_site | Ubiquitin interacting motif | Interproscan |
| IPR002014 all species → | Domain | VHS domain | Interproscan |
| IPR036028 all species → | Homologous_superfamily | SH3-like domain superfamily | Interproscan |
| IPR008942 all species → | Homologous_superfamily | ENTH/VHS | Interproscan |
| IPR050670 all species → | Family | Signal Transducing Adapter Molecule | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45929 all species → | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0035091 all species → | Molecular Function | phosphatidylinositol binding | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| GO:0033565 all species → | Cellular Component | ESCRT-0 complex | Interproscan |
| GO:0043328 all species → | Biological Process | protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04705 | STAM; signal transducing adaptor molecule | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap9.2238 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
