Gene detail

Detailed information of evm.model.Ap9.2258 in Astrangia poculata

Genomic Location: Ap9:24483891...24488290
NR annotation: XP_027046636.1, 60S ribosomal protein L7-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJ56	Large ribosomal subunit protein uL30 OS=Gallus gallus OX=9031 GN=RPL7 PE=1 SV=1
Q5R9R4	Large ribosomal subunit protein uL30 OS=Pongo abelii OX=9601 GN=RPL7 PE=2 SV=1
Q4R506	Large ribosomal subunit protein uL30 OS=Macaca fascicularis OX=9541 GN=RPL7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006863 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08079 all species →	Ribosomal_L30_N	Ribosomal L30 N-terminal domain	Domain	Interproscan
PF00327 all species →	Ribosomal_L30	Ribosomal protein L30p/L7e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035808 all species →	Domain	Large ribosomal subunit protein uL30, eukaryotic/archaeal	Interproscan
IPR005998 all species →	Family	Large ribosomal subunit protein uL30, eukaryotic	Interproscan
IPR018038 all species →	Conserved_site	Large ribosomal subunit protein uL30, conserved site	Interproscan
IPR012988 all species →	Domain	Large ribosomal subunit protein uL30, N-terminal, eukaryotes	Interproscan
IPR036919 all species →	Homologous_superfamily	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Interproscan
IPR039699 all species →	Family	Large ribosomal subunit protein uL30	Interproscan
IPR016082 all species →	Domain	Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11524 all species →	60S RIBOSOMAL PROTEIN L7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02937	RP-L7e, RPL7; large subunit ribosomal protein L7e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.