Gene detail

Detailed information of evm.model.Ap9.2412 in Astrangia poculata

Genomic Location: Ap9:26107748...26112858
NR annotation: XP_020610221.1, stearoyl-CoA desaturase 5-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92038	Acyl-CoA desaturase OS=Cyprinus carpio OX=7962 PE=2 SV=2
Q2KIA4	Stearoyl-CoA desaturase 5 OS=Bos taurus OX=9913 GN=SCD5 PE=2 SV=1
O00767	Stearoyl-CoA desaturase OS=Homo sapiens OX=9606 GN=SCD PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001992 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00487 all species →	FA_desaturase	Fatty acid desaturase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015876 all species →	Family	Acyl-CoA desaturase	Interproscan
IPR005804 all species →	Domain	Fatty acid desaturase domain	Interproscan
IPR001522 all species →	Conserved_site	Fatty acid desaturase type 1, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11351 all species →	ACYL-COA DESATURASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016717 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0004768 all species →	Molecular Function	stearoyl-CoA 9-desaturase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006636 all species →	Biological Process	unsaturated fatty acid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00507	SCD, desC; stearoyl-CoA desaturase (Delta-9 desaturase)	EC:1.14.19.1	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.