Genomic Location: Ap9:26166108...26177865
NR annotation: XP_020610297.1, transport and Golgi organization protein 6 homolog [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap9.2421 |
| Transcript |
| evm.model.Ap9.2421 |
| Protein |
| evm.model.Ap9.2421 |
| UniProt accession | Description |
|---|---|
| Q8C3S2 | Transport and Golgi organization protein 6 homolog OS=Mus musculus OX=10090 GN=Tango6 PE=1 SV=1 |
| Q9C0B7 | Transport and Golgi organization protein 6 homolog OS=Homo sapiens OX=9606 GN=TANGO6 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004055 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10363 all species → | RTP1_C1 | Required for nuclear transport of RNA pol II C-terminus 1 | Repeat | Interproscan |
| PF02985 all species → | HEAT | HEAT repeat | Repeat | Interproscan |
| PF10304 all species → | RTP1_C2 | Required for nuclear transport of RNA pol II C-terminus 2 | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019451 all species → | Domain | RNA polymerase II assembly factor Rtp1, C-terminal | Interproscan |
| IPR039600 all species → | Family | TANGO6/Rtp1 | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR000357 all species → | Repeat | HEAT repeat | Interproscan |
| IPR021133 all species → | Repeat | HEAT, type 2 | Interproscan |
| IPR019414 all species → | Domain | RNA polymerase II assembly factor Rtp1, C-terminal domain 2 | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR20959 all species → | TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009306 all species → | Biological Process | protein secretion | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
evm.model.Ap9.2421.Transcript abundance of evm.model.Ap9.2421 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
