Gene detail

Detailed information of evm.model.Ap9.2457 in Astrangia poculata

Genomic Location: Ap9:26504043...26504993
NR annotation: XP_020610292.1, signal recognition particle 9 kDa protein-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34642	Signal recognition particle 9 kDa protein OS=Caenorhabditis elegans OX=6239 GN=ZK512.4 PE=3 SV=1
P49962	Signal recognition particle 9 kDa protein OS=Mus musculus OX=10090 GN=Srp9 PE=1 SV=2
P21262	Signal recognition particle 9 kDa protein OS=Canis lupus familiaris OX=9615 GN=SRP9 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010712 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05486 all species →	SRP9-21	Signal recognition particle 9 kDa protein (SRP9)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009018 all species →	Homologous_superfamily	Signal recognition particle, SRP9/SRP14 subunit	Interproscan
IPR008832 all species →	Family	Signal recognition particle SRP9	Interproscan
IPR039914 all species →	Family	Signal recognition particle SRP9-like	Interproscan
IPR039432 all species →	Domain	SRP9 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12834 all species →	SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312 all species →	Molecular Function	7S RNA binding	Interproscan
GO:0048500 all species →	Cellular Component	signal recognition particle	Interproscan
GO:0045900 all species →	Biological Process	negative regulation of translational elongation	Interproscan
GO:0005786 all species →	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03109	SRP9; signal recognition particle subunit SRP9	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.