Detailed information of evm.model.Ap9.2495 in Astrangia poculata

Genomic Location: Ap9:27022313...27023005
NR annotation: XP_020616771.1, neurogenin-3-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O42606Neurogenin-1 OS=Danio rerio OX=7955 GN=neurog1 PE=2 SV=1
Q9W6C7Neurogenic differentiation factor 6-B OS=Danio rerio OX=7955 GN=neurod6b PE=1 SV=3
P70447Neurogenin-2 OS=Mus musculus OX=10090 GN=Neurog2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003779 (this species only)
Transcription factor familybHLH · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00010
all species →		HLHHelix-loop-helix DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011598
all species →		DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638
all species →		Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR050359
all species →		FamilyBasic helix-loop-helix transcription factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19290
all species →		BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046983
all species →		Molecular Functionprotein dimerization activityInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap9.2495.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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