Gene detail

Detailed information of evm.model.Ap9.2529 in Astrangia poculata

Genomic Location: Ap9:27360463...27386142
NR annotation: XP_027041615.1, myosin-IIIb-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.2529

gaaatcattaatattgtgaagtgtttagcatctgttcttcacattggaaacattgcatttggtgcaacaaaccaacaaacaaattcagcatttgtcaaagaccctcagcctgttcattgtgctagttctctccttggtgtatccgcggatgatttgggagaggcccttatcacaggaacggcttaccaaaaaggtgtgaaagtttcaattcaaaagactgtcaatctggcagctgaggggcgagacaatctggcgagaaccctttacagtcggctgttcagttggcttgtgttaaaggtcaacagctgtttgaaagaaagagctggaggtgaagagaacaggcactctgttgggccatcagtaggattgctggatgtattcggatttgagaaatttgaaattaacggtcttgaacaactatgcatcaacactgcaaatgagcagctggcctatttctacaaccagcgagtgttcatttgggaacaggaggaacttgaatctgaagggctgcgaaatcccaagatatcattttatgataacaagaaaactgtcgaccttctgctttatccaccacagggattgttgccggtcttggatgaagaaagcaaaactgcccaggccgctgatgcagcatttgtaaaaaaatgtgataacatccatcggaaacatccaaattacgacatggctaagctttcatatcccgccttcactattcggcactatactggcacagtaacatatgtgacgttggggtttttaaacagtaatagagagatgctgggtgccagtctccaagaatgtatgcagggtagcagtaatgagttcatctgtaaactgttcaaagccaagatttctgggacagggtcattagcactacagcccgaaagactgtcagccgtgcctaatattttgatgcaaaagaaaaagaacaagaagaatccaactataaggcacaaggcagcggttgttaaacacttggcctcgacagagaatcagcaagctgagcaaggttttcacacagtcggatcacagttcaggacgtctattgcagaattaatggaaaaagtgctgtcatgcgaagtacattttgtcaggtgcatcaagccaaattggtaccagtcccctgatcgttttgatcctgacgcggtactcgcccaagtgaggtcgttagctgttgttcagacggtgcaaataaggagtctgggtttccctgtgtggttttcgtttgatgccttcattaaaaggtttggtgttgtgaccggtttgttgccaaacgcgcacatcaaagacatgaaccagacctgtcaaaagatgcttcgtcagcttgctgatcccagagggtggaagataggaaaaacaaaggtgtttctgacatattggtgtttggaaaggttaaacttgtttctggttcgactgggagctgtggctgttgtcatacaaaaagttttcagaggttggcgagctagatctttctattccaggcttaaacgactcaaaatggtgcaggaaaacaccgtcaagagttttctagatgtgatcagcagtggtagcgatttgatatttgaacataattcaaatcaagtgacagaagaagatgcgaagcaaaagctgagactaaccgagcaagccaacgtgcaaaaacaggcctggagtcctaacgtgttaaatcagagcctcggccttctagcagccgacagcacctcaactttaacggatcaatactacgactctttttcagttgacgcattagttttggtatcagaaagatttccaatcactgattttgatgacatagattcaccggatggatttccaccgacatctcctcgccccaagtctccgcagaagaaagtctcaaacgtatcactgggctcaatctcagatctgttcggcccagagtccccgactcgccccgatccaccacggtctagggtgtccgacttatccataatgtccactgaatcgacgttttcagttgaatctgaagattttgacgctgcgccacaagtttggtgtaaaatcacctgtttcgaaagagaatcacctcgaggagagttctttattgatcgcccttcaatagtaattgatggctcgagcaacgcgtttgacgtaacgagaatcggcctaggagctttaccaccgagttccgaccctaaggttacgaaagtccgtagctacgttggaaagggtgtggaggttgtgaatgatgaagaggggaacgtttgggcgactcgaggaagcaagaacaacattttcgtcaagggtcatttcttatccgatgaagtgatcgatttaaaaggtgtcttagaaaaagatgccacgctacaggtttttgactgggaatctttcgcggtcacagttcgctattactgttcacagactaagaattttgattccagtatcgagactagcatcttgtcgagtgcctcgatctactttagctttgtaaaagatggcgaagatgacgttgacacaccatgctgggttcagctcgacgtgttgcaggccatagaacaaggaaaagctgcctgcaaatatgcccgcgataaaaaactgcaggagaagcaaaagatgctgaattcattgccagcaattcttcgtccaaagacaaaaaatgcgcgcgagatggccgccgtggcacactttcaacaacagatccgcccccgacggtttgttgacacggacaagttcaatcgaaaacaatgggcgcgaacagaagtggctatgaatcctttcctttatggtaaaaaggaggaacttacgatggttcgtcagagtcccttgaaggcgcttcaaacgaaatacaaggatgaccccggagaaagcttcgatggcgcttaccccatgccccagtccctgtcggatgcatttggcaatagttccgacgtaacggacgcgggacctgggcagatgagcgaaacaaacttggattttgcgcaggggatcgtgaatgtgtcgcagaatcaggaaacgagaaatactgtggtgacatcgacatctggtctcgaaaaacccaagaaagtgtgggcgaagaaaaaggtcgccgatgacaaggctgaaaaggcaaagaaaagatcttcgtctaaatttaagtaa

Transcript

evm.model.Ap9.2529

GAAATCATTAATATTGTGAAGTGTTTAGCATCTGTTCTTCACATTGGAAACATTGCATTTGGTGCAACAAACCAACAAACAAATTCAGCATTTGTCAAAGACCCTCAGCCTGTTCATTGTGCTAGTTCTCTCCTTGGTGTATCCGCGGATGATTTGGGAGAGGCCCTTATCACAGGAACGGCTTACCAAAAAGGTGTGAAAGTTTCAATTCAAAAGACTGTCAATCTGGCAGCTGAGGGGCGAGACAATCTGGCGAGAACCCTTTACAGTCGGCTGTTCAGTTGGCTTGTGTTAAAGGTCAACAGCTGTTTGAAAGAAAGAGCTGGAGGTGAAGAGAACAGGCACTCTGTTGGGCCATCAGTAGGATTGCTGGATGTATTCGGATTTGAGAAATTTGAAATTAACGGTCTTGAACAACTATGCATCAACACTGCAAATGAGCAGCTGGCCTATTTCTACAACCAGCGAGTGTTCATTTGGGAACAGGAGGAACTTGAATCTGAAGGGCTGCGAAATCCCAAGATATCATTTTATGATAACAAGAAAACTGTCGACCTTCTGCTTTATCCACCACAGGGATTGTTGCCGGTCTTGGATGAAGAAAGCAAAACTGCCCAGGCCGCTGATGCAGCATTTGTAAAAAAATGTGATAACATCCATCGGAAACATCCAAATTACGACATGGCTAAGCTTTCATATCCCGCCTTCACTATTCGGCACTATACTGGCACAGTAACATATGTGACGTTGGGGTTTTTAAACAGTAATAGAGAGATGCTGGGTGCCAGTCTCCAAGAATGTATGCAGGGTAGCAGTAATGAGTTCATCTGTAAACTGTTCAAAGCCAAGATTTCTGGGACAGGGTCATTAGCACTACAGCCCGAAAGACTGTCAGCCGTGCCTAATATTTTGATGCAAAAGAAAAAGAACAAGAAGAATCCAACTATAAGGCACAAGGCAGCGGTTGTTAAACACTTGGCCTCGACAGAGAATCAGCAAGCTGAGCAAGGTTTTCACACAGTCGGATCACAGTTCAGGACGTCTATTGCAGAATTAATGGAAAAAGTGCTGTCATGCGAAGTACATTTTGTCAGGTGCATCAAGCCAAATTGGTACCAGTCCCCTGATCGTTTTGATCCTGACGCGGTACTCGCCCAAGTGAGGTCGTTAGCTGTTGTTCAGACGGTGCAAATAAGGAGTCTGGGTTTCCCTGTGTGGTTTTCGTTTGATGCCTTCATTAAAAGGTTTGGTGTTGTGACCGGTTTGTTGCCAAACGCGCACATCAAAGACATGAACCAGACCTGTCAAAAGATGCTTCGTCAGCTTGCTGATCCCAGAGGGTGGAAGATAGGAAAAACAAAGGTGTTTCTGACATATTGGTGTTTGGAAAGGTTAAACTTGTTTCTGGTTCGACTGGGAGCTGTGGCTGTTGTCATACAAAAAGTTTTCAGAGGTTGGCGAGCTAGATCTTTCTATTCCAGGCTTAAACGACTCAAAATGGTGCAGGAAAACACCGTCAAGAGTTTTCTAGATGTGATCAGCAGTGGTAGCGATTTGATATTTGAACATAATTCAAATCAAGTGACAGAAGAAGATGCGAAGCAAAAGCTGAGACTAACCGAGCAAGCCAACGTGCAAAAACAGGCCTGGAGTCCTAACGTGTTAAATCAGAGCCTCGGCCTTCTAGCAGCCGACAGCACCTCAACTTTAACGGATCAATACTACGACTCTTTTTCAGTTGACGCATTAGTTTTGGTATCAGAAAGATTTCCAATCACTGATTTTGATGACATAGATTCACCGGATGGATTTCCACCGACATCTCCTCGCCCCAAGTCTCCGCAGAAGAAAGTCTCAAACGTATCACTGGGCTCAATCTCAGATCTGTTCGGCCCAGAGTCCCCGACTCGCCCCGATCCACCACGGTCTAGGGTGTCCGACTTATCCATAATGTCCACTGAATCGACGTTTTCAGTTGAATCTGAAGATTTTGACGCTGCGCCACAAGTTTGGTGTAAAATCACCTGTTTCGAAAGAGAATCACCTCGAGGAGAGTTCTTTATTGATCGCCCTTCAATAGTAATTGATGGCTCGAGCAACGCGTTTGACGTAACGAGAATCGGCCTAGGAGCTTTACCACCGAGTTCCGACCCTAAGGTTACGAAAGTCCGTAGCTACGTTGGAAAGGGTGTGGAGGTTGTGAATGATGAAGAGGGGAACGTTTGGGCGACTCGAGGAAGCAAGAACAACATTTTCGTCAAGGGTCATTTCTTATCCGATGAAGTGATCGATTTAAAAGGTGTCTTAGAAAAAGATGCCACGCTACAGGTTTTTGACTGGGAATCTTTCGCGGTCACAGTTCGCTATTACTGTTCACAGACTAAGAATTTTGATTCCAGTATCGAGACTAGCATCTTGTCGAGTGCCTCGATCTACTTTAGCTTTGTAAAAGATGGCGAAGATGACGTTGACACACCATGCTGGGTTCAGCTCGACGTGTTGCAGGCCATAGAACAAGGAAAAGCTGCCTGCAAATATGCCCGCGATAAAAAACTGCAGGAGAAGCAAAAGATGCTGAATTCATTGCCAGCAATTCTTCGTCCAAAGACAAAAAATGCGCGCGAGATGGCCGCCGTGGCACACTTTCAACAACAGATCCGCCCCCGACGGTTTGTTGACACGGACAAGTTCAATCGAAAACAATGGGCGCGAACAGAAGTGGCTATGAATCCTTTCCTTTATGGTAAAAAGGAGGAACTTACGATGGTTCGTCAGAGTCCCTTGAAGGCGCTTCAAACGAAATACAAGGATGACCCCGGAGAAAGCTTCGATGGCGCTTACCCCATGCCCCAGTCCCTGTCGGATGCATTTGGCAATAGTTCCGACGTAACGGACGCGGGACCTGGGCAGATGAGCGAAACAAACTTGGATTTTGCGCAGGGGATCGTGAATGTGTCGCAGAATCAGGAAACGAGAAATACTGTGGTGACATCGACATCTGGTCTCGAAAAACCCAAGAAAGTGTGGGCGAAGAAAAAGGTCGCCGATGACAAGGCTGAAAAGGCAAAGAAAAGATCTTCGTCTAAATTTAAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WXR4	Myosin-IIIb OS=Homo sapiens OX=9606 GN=MYO3B PE=1 SV=4
Q1EG27	Myosin-IIIb OS=Mus musculus OX=10090 GN=Myo3b PE=1 SV=2
Q8NEV4	Myosin-IIIa OS=Homo sapiens OX=9606 GN=MYO3A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000789 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03166 all species →	MH2	MH2 domain	Family	Interproscan
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017855 all species →	Homologous_superfamily	SMAD-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR001132 all species →	Domain	SMAD domain, Dwarfin-type	Interproscan
IPR052409 all species →	Family	Myosin-III family with kinase activity	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46256 all species →	AGAP011099-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0030832 all species →	Biological Process	regulation of actin filament length	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.2529.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.