Gene detail

Detailed information of evm.model.Ap9.2553 in Astrangia poculata

Genomic Location: Ap9:27547975...27556757
NR annotation: XP_020606494.1, death-inducer obliterator 1-like isoform X3 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.2553

atgtctgaccatacttgggatttcgttggacatgagcaaattttgggcggcaaatgtccgatgaccaactgcagccatggatgcatcaaactggtgctgtttcgacatgtgttatctggggaaataactgtggaccgtcttgtacgcatgacgcctgagcagcttgcatcaccggagctagccacttggcgtgagcaggaaaccaaacatacattggagatgatcaggatgaatcaagaggaaataaatgcatcaaaagcacacatcaagaaaacacacaagggtgaagtggaaatagatgatgacgacttgagtactcttgagaactctgtccaggccaatgccgagctgaaggtggagaaaggtctcccggatagcaacacaagctccagcatcttacttctcgacaccacagatgaacatcgtatacacttgtttgatctcaactgccgcatttgcactggtaaaatggcacccccaggggagccgcctaggagggaaacacccgctcctcttgtttctacaacctcaattgtacaagctgtagcggagagttccatcccatcaccgacacccatggatattgtcacctctgcaagttcaccagactcagctacagttacccagccccccgtctcaccctctgtactcagcaagactcagaagaagatccccgcagtatggaaagggtttgtgatgatgcaaagtgttgctaagtttggtaccagtgcttaccgtgtctctgggtcatgtgacaacttgctgcagttgttaccagacactctgcatgtacagggcaggatagcgcatgagcaagtgtgggattacctcttgcagctgaagaactccacgtcaagggaagtgtgtgtaataagatacgaggcatcctctgatgatgaaaagctgagctatgtgtccctgtactcgtacttctacagtcgcaagcgctgtggagtggtcagtaactgttacacgggagtcaaggacatgtacctggtacctttagcttcccatcaacgtgtaccaccagagttgctgccatttgatgggcctgggttagacgaacctcgtcctcatatgctgcttggtgttattgtccgatccaaggctgtttttaaacgcccgcgtgcgctaagtcagcgttcattgtcaccaccgccaaagcgacgaaccagttcagcgagcatcgagactagcagcagtgagggaggtactgtggacagcccggccagcaagcgaagcgtgctgagtgaacttcacgattcaccaccagctgatattgatgacattgtgttccagtacaacaccactcaagccaagattgccagcaaagaaacgaaagattcaccagctaaagcttcgcctgcttctgaaacctcgacaccttcaatcacgtcgtcctctggagccgtgacctctccctctgtctccactgacatgtcgtcggttccatcgcttgaagcacagaaacagcagttattggatcttcaagagcgtgcgaggcagtacattttagcacagacccaacggaaaggaacagcctcggcaaaggaagagcctcaaggggtgagcgaggacaaagacgccccagacactgctaacgtagagctaaagggaggggagagtaaagtgactgacgatgatgatgatgctccgtatgatccagaggaagggttagagcttgatcttaaccccaccgaccccaccccagccaaacctgcagtacctgtgacatctgaagagtcctctaaaccttctagctttcagatgctggtatccactcttcagaggcttcaaagtgctgctgttaaaaatgtaagcccccacctggcagcactgagtacagtgctaccattgggttccactgctgcatccagtgagacttctgctgcagccacagcaagcacagccagccaacccagcaacacaccaggcaatggcatccagtctgtggcatcaactagcagtatactgcagcctgttgtaccagccagtcgtgatttgcagttggtgtcttctcctaacaatacatcgcaaccaatagcttacagtagtcacgaaccgcagttttcaagtatgactgacaaacggccaacggcatttggttcgtctggacacttactgcagcattcaggtccttctgaccaccaggcagtgtctgccaatagacacataccgcagccatcacctggacacatagtgcagccttcaggtgtggcaaagcatcagcccatgtctgtaggtggacaaacaccacattcttcaggtgctgctgaccggcagccagtatcgtcaggtgggcgtataattcagccctccggagtggctgaccagcaacccatgcctgtaggtggacgcgtagtgcataatgaccctacagttggacgtggaccacagtcttccagtgttcccgacagacaacctgtgtcaatcggttcaactggacgcatgccgcagcctgatgtttctaccaggggaggtgtaaagtcacccacttcgcgtgttcatcatcattctacctcctctggccaaagctttcattccagacctccctctgatcaaagacagcaaccggttcctcatgacagcggtcataccaacagatggaacccatctgaaccgccacaagttactcgtcacgtgaacgacgtcactcagcagacaggacaagagtacagcggtcttcgtccagaagagcgtgcgcggctggcggctcatgaatcgcgcatggaatcacgggaaaacaggcgagtgccaagcgagcatagagatgagcattacgagcaaagaagaatggacgacaggcacagaggcagttggtacaacgacccgcgattcccacgggaatcccgacctggtgattcaagcgagtcgcgtttccctcgggattcccgagcctccgactcacgaagtgactggcgacatcaacacaggcccggacgccagtggtacgatgatgagcagcggcgagacaggcacgaatatccggtagacgaacgaccaagatacgaggaacgcagagaagagagaagatttaaagagcattggagccgggatagatggaggcggtga

Transcript

evm.model.Ap9.2553

ATGTCTGACCATACTTGGGATTTCGTTGGACATGAGCAAATTTTGGGCGGCAAATGTCCGATGACCAACTGCAGCCATGGATGCATCAAACTGGTGCTGTTTCGACATGTGTTATCTGGGGAAATAACTGTGGACCGTCTTGTACGCATGACGCCTGAGCAGCTTGCATCACCGGAGCTAGCCACTTGGCGTGAGCAGGAAACCAAACATACATTGGAGATGATCAGGATGAATCAAGAGGAAATAAATGCATCAAAAGCACACATCAAGAAAACACACAAGGGTGAAGTGGAAATAGATGATGACGACTTGAGTACTCTTGAGAACTCTGTCCAGGCCAATGCCGAGCTGAAGGTGGAGAAAGGTCTCCCGGATAGCAACACAAGCTCCAGCATCTTACTTCTCGACACCACAGATGAACATCGTATACACTTGTTTGATCTCAACTGCCGCATTTGCACTGGTAAAATGGCACCCCCAGGGGAGCCGCCTAGGAGGGAAACACCCGCTCCTCTTGTTTCTACAACCTCAATTGTACAAGCTGTAGCGGAGAGTTCCATCCCATCACCGACACCCATGGATATTGTCACCTCTGCAAGTTCACCAGACTCAGCTACAGTTACCCAGCCCCCCGTCTCACCCTCTGTACTCAGCAAGACTCAGAAGAAGATCCCCGCAGTATGGAAAGGGTTTGTGATGATGCAAAGTGTTGCTAAGTTTGGTACCAGTGCTTACCGTGTCTCTGGGTCATGTGACAACTTGCTGCAGTTGTTACCAGACACTCTGCATGTACAGGGCAGGATAGCGCATGAGCAAGTGTGGGATTACCTCTTGCAGCTGAAGAACTCCACGTCAAGGGAAGTGTGTGTAATAAGATACGAGGCATCCTCTGATGATGAAAAGCTGAGCTATGTGTCCCTGTACTCGTACTTCTACAGTCGCAAGCGCTGTGGAGTGGTCAGTAACTGTTACACGGGAGTCAAGGACATGTACCTGGTACCTTTAGCTTCCCATCAACGTGTACCACCAGAGTTGCTGCCATTTGATGGGCCTGGGTTAGACGAACCTCGTCCTCATATGCTGCTTGGTGTTATTGTCCGATCCAAGGCTGTTTTTAAACGCCCGCGTGCGCTAAGTCAGCGTTCATTGTCACCACCGCCAAAGCGACGAACCAGTTCAGCGAGCATCGAGACTAGCAGCAGTGAGGGAGGTACTGTGGACAGCCCGGCCAGCAAGCGAAGCGTGCTGAGTGAACTTCACGATTCACCACCAGCTGATATTGATGACATTGTGTTCCAGTACAACACCACTCAAGCCAAGATTGCCAGCAAAGAAACGAAAGATTCACCAGCTAAAGCTTCGCCTGCTTCTGAAACCTCGACACCTTCAATCACGTCGTCCTCTGGAGCCGTGACCTCTCCCTCTGTCTCCACTGACATGTCGTCGGTTCCATCGCTTGAAGCACAGAAACAGCAGTTATTGGATCTTCAAGAGCGTGCGAGGCAGTACATTTTAGCACAGACCCAACGGAAAGGAACAGCCTCGGCAAAGGAAGAGCCTCAAGGGGTGAGCGAGGACAAAGACGCCCCAGACACTGCTAACGTAGAGCTAAAGGGAGGGGAGAGTAAAGTGACTGACGATGATGATGATGCTCCGTATGATCCAGAGGAAGGGTTAGAGCTTGATCTTAACCCCACCGACCCCACCCCAGCCAAACCTGCAGTACCTGTGACATCTGAAGAGTCCTCTAAACCTTCTAGCTTTCAGATGCTGGTATCCACTCTTCAGAGGCTTCAAAGTGCTGCTGTTAAAAATGTAAGCCCCCACCTGGCAGCACTGAGTACAGTGCTACCATTGGGTTCCACTGCTGCATCCAGTGAGACTTCTGCTGCAGCCACAGCAAGCACAGCCAGCCAACCCAGCAACACACCAGGCAATGGCATCCAGTCTGTGGCATCAACTAGCAGTATACTGCAGCCTGTTGTACCAGCCAGTCGTGATTTGCAGTTGGTGTCTTCTCCTAACAATACATCGCAACCAATAGCTTACAGTAGTCACGAACCGCAGTTTTCAAGTATGACTGACAAACGGCCAACGGCATTTGGTTCGTCTGGACACTTACTGCAGCATTCAGGTCCTTCTGACCACCAGGCAGTGTCTGCCAATAGACACATACCGCAGCCATCACCTGGACACATAGTGCAGCCTTCAGGTGTGGCAAAGCATCAGCCCATGTCTGTAGGTGGACAAACACCACATTCTTCAGGTGCTGCTGACCGGCAGCCAGTATCGTCAGGTGGGCGTATAATTCAGCCCTCCGGAGTGGCTGACCAGCAACCCATGCCTGTAGGTGGACGCGTAGTGCATAATGACCCTACAGTTGGACGTGGACCACAGTCTTCCAGTGTTCCCGACAGACAACCTGTGTCAATCGGTTCAACTGGACGCATGCCGCAGCCTGATGTTTCTACCAGGGGAGGTGTAAAGTCACCCACTTCGCGTGTTCATCATCATTCTACCTCCTCTGGCCAAAGCTTTCATTCCAGACCTCCCTCTGATCAAAGACAGCAACCGGTTCCTCATGACAGCGGTCATACCAACAGATGGAACCCATCTGAACCGCCACAAGTTACTCGTCACGTGAACGACGTCACTCAGCAGACAGGACAAGAGTACAGCGGTCTTCGTCCAGAAGAGCGTGCGCGGCTGGCGGCTCATGAATCGCGCATGGAATCACGGGAAAACAGGCGAGTGCCAAGCGAGCATAGAGATGAGCATTACGAGCAAAGAAGAATGGACGACAGGCACAGAGGCAGTTGGTACAACGACCCGCGATTCCCACGGGAATCCCGACCTGGTGATTCAAGCGAGTCGCGTTTCCCTCGGGATTCCCGAGCCTCCGACTCACGAAGTGACTGGCGACATCAACACAGGCCCGGACGCCAGTGGTACGATGATGAGCAGCGGCGAGACAGGCACGAATATCCGGTAGACGAACGACCAAGATACGAGGAACGCAGAGAAGAGAGAAGATTTAAAGAGCATTGGAGCCGGGATAGATGGAGGCGGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92576	PHD finger protein 3 OS=Homo sapiens OX=9606 GN=PHF3 PE=1 SV=3
Q8C9B9	Death-inducer obliterator 1 OS=Mus musculus OX=10090 GN=Dido1 PE=1 SV=4
Q9BTC0	Death-inducer obliterator 1 OS=Homo sapiens OX=9606 GN=DIDO1 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003690 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07500 all species →	TFIIS_M	Transcription factor S-II (TFIIS), central domain	Domain	Interproscan
PF07744 all species →	SPOC	SPOC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003618 all species →	Domain	Transcription elongation factor S-II, central domain	Interproscan
IPR012921 all species →	Domain	Spen paralogue and orthologue SPOC, C-terminal	Interproscan
IPR036575 all species →	Homologous_superfamily	Transcription elongation factor S-II, central domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11477 all species →	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.2553.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.