Detailed information of evm.model.Ap9.2560 in Astrangia poculata

Genomic Location: Ap9:27668106...27670324
NR annotation: XP_020606507.1, probable E3 ubiquitin-protein ligase RNF217 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4KLT0E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis OX=8355 GN=rnf217 PE=2 SV=1
D3YYI7E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 PE=1 SV=2
Q8TC41E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002576 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01485
all species →		IBRIBR domain, a half RING-finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002867
all species →		DomainIBR domainInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR031127
all species →		FamilyE3 ubiquitin ligase RBR familyInterproscan
IPR047552
all species →		DomainE3 ubiquitin-protein ligase RNF217, Rcat domainInterproscan
IPR047551
all species →		DomainE3 ubiquitin-protein ligase RNF217, BRcat domainInterproscan
IPR044066
all species →		DomainTRIAD supradomainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11685
all species →		RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0000151
all species →		Cellular Componentubiquitin ligase complexInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0031624
all species →		Molecular Functionubiquitin conjugating enzyme bindingInterproscan
GO:0032436
all species →		Biological Processpositive regulation of proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap9.2560.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP