Genomic Location: Ap9:27671898...27675913
NR annotation: XP_020606483.1, E3 SUMO-protein ligase NSE2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap9.2561 |
| Transcript |
| evm.model.Ap9.2561 |
| Protein |
| evm.model.Ap9.2561 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002576 (this species only) |
| Transcription factor family | zf-MIZ · all TF in this species |
| Ubiquitin family | E3|E3 activity RING|U-box · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11789 all species → | zf-Nse | Zinc-finger of the MIZ type in Nse subunit | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR003613 all species → | Domain | U-box domain | Interproscan |
| IPR004181 all species → | Domain | Zinc finger, MIZ-type | Interproscan |
| IPR026846 all species → | Family | E3 SUMO-protein ligase Nse2 (Mms21) | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21330 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0000724 all species → | Biological Process | double-strand break repair via homologous recombination | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0016925 all species → | Biological Process | protein sumoylation | Interproscan |
| GO:0019789 all species → | Molecular Function | SUMO transferase activity | Interproscan |
| GO:0030915 all species → | Cellular Component | Smc5-Smc6 complex | Interproscan |
| GO:0061665 all species → | Molecular Function | SUMO ligase activity | Interproscan |
evm.model.Ap9.2561.Transcript abundance of evm.model.Ap9.2561 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
