Gene detail

Detailed information of evm.model.Ap9.2575_evm.model.Ap9.2576 in Astrangia poculata

Genomic Location: Ap9:27760601...27791234
NR annotation: CAH3157002.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.2575_evm.model.Ap9.2576

atggcgctattgcagtggcggaggttcaatttttttgacaaggaagttctaaaggaccctgggagtactcaaccatttacgggtctaaaggacatcaatattacagcttgtacaagtggaaggggccagttggttattggagattcagctggatttgttcacttcctgggtcgtgatttgaccatcacatccttccaggcctatgaaatgcgtgtgtctcatttctatcaactgaaacagcagaatattttgtttacagttggagaagatgaagttgatggtattgatcctattatcagagtgtggaatcttgacaagattgacaaatatggaaatccagtttgctgttgcatgcaaagactcattccaggaaacaaaccagtgccggtgtcatgtctggcgctgatggagaatctgacgcagatggctgttggttttgctgatggaagtgttcttgtgtacaaaggagatatcacaagagacaggcacacaaaacagaggattatacatcatgacaaacatcctgtaacaggacttgcttttaagcaaaccagtgacagtgtagttctgtttgttgtgacgacggaaacagttcttgcatacaacacttcagccaaagatcgccgagaagtgttagatgctcatggctgtgagcttcgatgctctgttatgagtgatgcttcacaagaaaaccagtttattgtggctcggaaagaggcattatacttctaccaaattgatggcagaggcccttgtttagcatttgaaggtgagaagcagatggtgacttggtggcgtggttatcttgttgttgtcagtcaggacaacaaacagattcagaggccagcagtagggggaagttctcaaccacgaaacgttaacgttgttactgtttatgatatacaaaacaagtttattgcatttactgggacttttcagggtgtaattgatgtaatatgtgaatggggcagcttatttgtaatcacaatggaaaataagatttttcagctggaagagaaggatacacagacaaaattagaaattcttttcaagaaaaatctctatgcaatggcaatcagtttggcaaagagtcagcattattctgatggtttgattgacatattcacacaatatggagatcacttgtacagcaaaggggatcacgatggagcaataaaacagtatattaaaaccattggacacctggaaccatcttatgtcattcgcaagttcttggatgctcagagaattcacaaccttacagcatatcttcaggctctccacaaacagggacttgctaataccgatcataccactctgcttctgaactgttacaccaaactcaaagatgtctccatgctggacgagtttatcatgaccgatagagaattaaactttgatgttgaaactgcaatcaaggtctgtcgccaggctgggtatttcaagcatgctgtgtatttagcagagaaatatgatcagcatgatttatatttgaagattcaactggaagatctcaaggattaccaaagagctttgtcctacattggaaaactagacttttatgaggccgaagataacatgaaaaaatatggcaagagtctggtgaatgccgttcctgacgaagcaacaaagttgctcaaagggttgtgcacggattacagaccgcaacgacttgaacgcacagtttctggttcagttacaccagtcagtatcggggtttttcagaccatgacaagcttcttggatcccgcctctgatgtggagcggaagattcacaaggctcgcgcagaagagttcatccacatctttgtccatcaaaaggccaagttgattgagttccttgagcacatggtgcaggtacagcctcattcatccaaccttgtgtacaacactcttcttgaactttaccttaacgacgctgctcgccagaaggattttgaggcacaagtcgaacatgaacgcaaagcgcttgatttgctgaaaaatgtggaggcacgttacgacattgaccatgccctagtattagcccagatgcaccatttcaaagctggaatcctgtatctgtatgaaaaggctaaactttaccaacagatacttcattaccacatggagcagaacgagtacagtcacgtgattgacacgtgcaagaagtatggcactttggatgcgagtttgtgggtgcaagctctctcgtactttgcccgacgggaaacagattgcaagtcccaaattatggaagtgctggcccatatcgatcgtgggaatctcatgtccccgctgctggtgttacaaaatctggcgcacaactccacagcaacgctagctgtagtcaaggattacattatccaccgcttacaaatggaagacgaactcatttcaaacgatgagcgttatattcgtcagtatcgagaggaaactgaaaagatgaggaatcagattaaagagctgaaaacaagtgcgaagatatttcaaggggcaaagtgcagtgtgtgttcccgaccgttggacctgcctgcagttcacttcctatgtcagcattcatttcaccaaatctgttttgagggatatgctgaaacagacaatgaatgtcctatatgcgctccagagaacaggaaagttcttgacattatacgacaacaggagcaggctaaagatctccatgagcaatttcatcaccagcttgagagagcagctgacggcttctctgttgtggctgagtattacggacgtggtgtttttaacaaggtaacactcgtgactgacccctccccttcacggggtcgtttgtctcacgaagatgctgcagatcagcgcggaaaactgctagacagcgcgcacagttag

Transcript

evm.model.Ap9.2575_evm.model.Ap9.2576

ATGGCGCTATTGCAGTGGCGGAGGTTCAATTTTTTTGACAAGGAAGTTCTAAAGGACCCTGGGAGTACTCAACCATTTACGGGTCTAAAGGACATCAATATTACAGCTTGTACAAGTGGAAGGGGCCAGTTGGTTATTGGAGATTCAGCTGGATTTGTTCACTTCCTGGGTCGTGATTTGACCATCACATCCTTCCAGGCCTATGAAATGCGTGTGTCTCATTTCTATCAACTGAAACAGCAGAATATTTTGTTTACAGTTGGAGAAGATGAAGTTGATGGTATTGATCCTATTATCAGAGTGTGGAATCTTGACAAGATTGACAAATATGGAAATCCAGTTTGCTGTTGCATGCAAAGACTCATTCCAGGAAACAAACCAGTGCCGGTGTCATGTCTGGCGCTGATGGAGAATCTGACGCAGATGGCTGTTGGTTTTGCTGATGGAAGTGTTCTTGTGTACAAAGGAGATATCACAAGAGACAGGCACACAAAACAGAGGATTATACATCATGACAAACATCCTGTAACAGGACTTGCTTTTAAGCAAACCAGTGACAGTGTAGTTCTGTTTGTTGTGACGACGGAAACAGTTCTTGCATACAACACTTCAGCCAAAGATCGCCGAGAAGTGTTAGATGCTCATGGCTGTGAGCTTCGATGCTCTGTTATGAGTGATGCTTCACAAGAAAACCAGTTTATTGTGGCTCGGAAAGAGGCATTATACTTCTACCAAATTGATGGCAGAGGCCCTTGTTTAGCATTTGAAGGTGAGAAGCAGATGGTGACTTGGTGGCGTGGTTATCTTGTTGTTGTCAGTCAGGACAACAAACAGATTCAGAGGCCAGCAGTAGGGGGAAGTTCTCAACCACGAAACGTTAACGTTGTTACTGTTTATGATATACAAAACAAGTTTATTGCATTTACTGGGACTTTTCAGGGTGTAATTGATGTAATATGTGAATGGGGCAGCTTATTTGTAATCACAATGGAAAATAAGATTTTTCAGCTGGAAGAGAAGGATACACAGACAAAATTAGAAATTCTTTTCAAGAAAAATCTCTATGCAATGGCAATCAGTTTGGCAAAGAGTCAGCATTATTCTGATGGTTTGATTGACATATTCACACAATATGGAGATCACTTGTACAGCAAAGGGGATCACGATGGAGCAATAAAACAGTATATTAAAACCATTGGACACCTGGAACCATCTTATGTCATTCGCAAGTTCTTGGATGCTCAGAGAATTCACAACCTTACAGCATATCTTCAGGCTCTCCACAAACAGGGACTTGCTAATACCGATCATACCACTCTGCTTCTGAACTGTTACACCAAACTCAAAGATGTCTCCATGCTGGACGAGTTTATCATGACCGATAGAGAATTAAACTTTGATGTTGAAACTGCAATCAAGGTCTGTCGCCAGGCTGGGTATTTCAAGCATGCTGTGTATTTAGCAGAGAAATATGATCAGCATGATTTATATTTGAAGATTCAACTGGAAGATCTCAAGGATTACCAAAGAGCTTTGTCCTACATTGGAAAACTAGACTTTTATGAGGCCGAAGATAACATGAAAAAATATGGCAAGAGTCTGGTGAATGCCGTTCCTGACGAAGCAACAAAGTTGCTCAAAGGGTTGTGCACGGATTACAGACCGCAACGACTTGAACGCACAGTTTCTGGTTCAGTTACACCAGTCAGTATCGGGGTTTTTCAGACCATGACAAGCTTCTTGGATCCCGCCTCTGATGTGGAGCGGAAGATTCACAAGGCTCGCGCAGAAGAGTTCATCCACATCTTTGTCCATCAAAAGGCCAAGTTGATTGAGTTCCTTGAGCACATGGTGCAGGTACAGCCTCATTCATCCAACCTTGTGTACAACACTCTTCTTGAACTTTACCTTAACGACGCTGCTCGCCAGAAGGATTTTGAGGCACAAGTCGAACATGAACGCAAAGCGCTTGATTTGCTGAAAAATGTGGAGGCACGTTACGACATTGACCATGCCCTAGTATTAGCCCAGATGCACCATTTCAAAGCTGGAATCCTGTATCTGTATGAAAAGGCTAAACTTTACCAACAGATACTTCATTACCACATGGAGCAGAACGAGTACAGTCACGTGATTGACACGTGCAAGAAGTATGGCACTTTGGATGCGAGTTTGTGGGTGCAAGCTCTCTCGTACTTTGCCCGACGGGAAACAGATTGCAAGTCCCAAATTATGGAAGTGCTGGCCCATATCGATCGTGGGAATCTCATGTCCCCGCTGCTGGTGTTACAAAATCTGGCGCACAACTCCACAGCAACGCTAGCTGTAGTCAAGGATTACATTATCCACCGCTTACAAATGGAAGACGAACTCATTTCAAACGATGAGCGTTATATTCGTCAGTATCGAGAGGAAACTGAAAAGATGAGGAATCAGATTAAAGAGCTGAAAACAAGTGCGAAGATATTTCAAGGGGCAAAGTGCAGTGTGTGTTCCCGACCGTTGGACCTGCCTGCAGTTCACTTCCTATGTCAGCATTCATTTCACCAAATCTGTTTTGAGGGATATGCTGAAACAGACAATGAATGTCCTATATGCGCTCCAGAGAACAGGAAAGTTCTTGACATTATACGACAACAGGAGCAGGCTAAAGATCTCCATGAGCAATTTCATCACCAGCTTGAGAGAGCAGCTGACGGCTTCTCTGTTGTGGCTGAGTATTACGGACGTGGTGTTTTTAACAAGGTAACACTCGTGACTGACCCCTCCCCTTCACGGGGTCGTTTGTCTCACGAAGATGCTGCAGATCAGCGCGGAAAACTGCTAGACAGCGCGCACAGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H270	Vacuolar protein sorting-associated protein 11 homolog OS=Homo sapiens OX=9606 GN=VPS11 PE=1 SV=1
Q91W86	Vacuolar protein sorting-associated protein 11 homolog OS=Mus musculus OX=10090 GN=Vps11 PE=1 SV=3
Q54YP4	Vacuolar protein sorting-associated protein 11 homolog OS=Dictyostelium discoideum OX=44689 GN=vps11 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002725 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF12451 all species →	VPS11_C	Vacuolar protein sorting protein 11 C terminal	Family	Interproscan
PF00637 all species →	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000547 all species →	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR016528 all species →	Family	Vacuolar protein sorting-associated protein 11	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR024763 all species →	Domain	Vacuolar protein sorting protein 11, C-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23323 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006904 all species →	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0007033 all species →	Biological Process	vacuole organization	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan
GO:0048284 all species →	Biological Process	organelle fusion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20179	VPS11, PEP5; vacuolar protein sorting-associated protein 11	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.