Genomic Location: Ap9:27897619...27904309
NR annotation: KAJ7351006.1, Ubiquinol-cytochrome-c reductase complex assembly factor 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap9.2590 |
| Transcript |
| evm.model.Ap9.2590 |
| Protein |
| evm.model.Ap9.2590 |
| UniProt accession | Description |
|---|---|
| Q9W6I0 | Ubiquinol-cytochrome-c reductase complex assembly factor 1 OS=Xenopus laevis OX=8355 GN=uqcc1 PE=2 SV=1 |
| Q9CWU6 | Ubiquinol-cytochrome c reductase complex assembly factor 1 OS=Mus musculus OX=10090 GN=Uqcc1 PE=1 SV=1 |
| Q9NVA1 | Ubiquinol-cytochrome c reductase complex assembly factor 1 OS=Homo sapiens OX=9606 GN=UQCC1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007756 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03981 all species → | Ubiq_cyt_C_chap | Ubiquinol-cytochrome C chaperone | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007129 all species → | Family | Ubiquinol-cytochrome c chaperone, CBP3 | Interproscan |
| IPR021150 all species → | Domain | Ubiquinol-cytochrome c chaperone | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12184 all species → | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX ASSEMBLY FACTOR 1 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0034551 all species → | Biological Process | mitochondrial respiratory chain complex III assembly | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17662 | CBP3, UQCC; cytochrome b pre-mRNA-processing protein 3 | - | Mitochondrial biogenesis | ko03029 | deepkoala |
Transcript abundance of evm.model.Ap9.2590 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
