Gene detail

Detailed information of evm.model.Ap9.2629 in Astrangia poculata

Genomic Location: Ap9:28308732...28310738
NR annotation: XP_020604289.1, protein zwilch homolog [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.2629

atggaggattttagcgaagatgtcagctctctcgcaaaaactttaacgatttttagcaacagtagctcaggaaacgttacagaaacaaagttcctgacatcagattcacaacacgagtttctcatttgggtaataccgccgaaaacgtaccatccattgcgaagaattgtcggtaaaagttcaagtggttttcttgtcgttggaaaaagtttacaagattgcgaagaaactgtggattctccaaaccaaacgagctctcgactcacaagatataagaatgaaagagtcccagttggcacaccgctttcgcaagagatgttttatctcacaaacagtgagcccttgcaaccttatgccggcgtaaacaaagataataagcttagtgcagataagaaaggttgtatcaccgagtggttcttgtcgcaggaaaatattcacccagctactctagaaagcgcgagatacttcctctctatctatgcgaatacactgagaatctctttgcaacccttggaggtatgggtgtgcatagatgggaacaatccccaagggataacttatctaggcatggtccctgacggaaactctaacagcgacaaaagtaaggacattgaaactgttgaaagaaattctatgaggactgtgatctacaccagcaagagtgagcccataacgactaaagaagatctaccagagctgagttttttcttgcgtcatcatctgtcgtcaagttcctccactgcctttgtcgagacccatggctacgcccttcatgaggtgatgggttcttcaaattccaatagtcaagaatgcagcaacagtacaattgctgtagagttaacatggaggggggttcattctcttctccaacctcatccgcactcatgcgacggtgttctccacattaagagcattccagggagtgtccatctcgccacacattcattgtacctggaattggtgcgggctgatcatttttccaaggtcttagagaatgaagattttccctggccagcacctgtagctgccaatgcaaatcctgttgcttcacaaatggatgcattctttaccaagttaagctccagcaatgtattttcaccaacatttgaagaagatcatgaagaaggggaagaagaacgcacctttgccgaggcgtcaatggctcacttaacattccaagagtttgctcgcaaagatttggacttcactgaacgactttggcttttattgaaagattgcattgatgaagatgatctcattgcttcattgcaaatgtgcagtgtagcactattcagtaacagatgtcaaccagtcatccacagctcaaacaagacgtctatagcagtgttcattagggatttgctgcagtttgaaacaaaagaacagcagcagaaacttcagaaccaagccaagcagtttctttctcccgattcagccatcaagtgcttggtagaaattggctgtgaaaagcttgccagagattatactcagtatttcattcaccaggagctggcaaccatgggacaactggcaagctatttggataacaacgtcctgctccgcaccagagtctcgaacatcaagaaacttcatcagacactagagatggttgttacagcaaagtctgtaacaaggctaggccatgaaaacctgcgagccttgacacagagtgctcttacatattaccagtcacaccctgacagtcaacaacctgtgttctccctgtcactgccggcatttggatcgacttctggagaagctgtgaagagtatctgtgcttcatctaatcccgccgtgtggtgtgttgcgatcaggtccaagacaaagattggaagtcataccaccattgtacagctaagtacgagcgctccaggaaatgctggtacttctgaaagccctgcttatgatctcactgaactgaatgatgaagactttgacccagacaaggataaatttcactattttctttcctgtgctaagcaagtgttcatgccaattattcggtaa

Transcript

evm.model.Ap9.2629

ATGGAGGATTTTAGCGAAGATGTCAGCTCTCTCGCAAAAACTTTAACGATTTTTAGCAACAGTAGCTCAGGAAACGTTACAGAAACAAAGTTCCTGACATCAGATTCACAACACGAGTTTCTCATTTGGGTAATACCGCCGAAAACGTACCATCCATTGCGAAGAATTGTCGGTAAAAGTTCAAGTGGTTTTCTTGTCGTTGGAAAAAGTTTACAAGATTGCGAAGAAACTGTGGATTCTCCAAACCAAACGAGCTCTCGACTCACAAGATATAAGAATGAAAGAGTCCCAGTTGGCACACCGCTTTCGCAAGAGATGTTTTATCTCACAAACAGTGAGCCCTTGCAACCTTATGCCGGCGTAAACAAAGATAATAAGCTTAGTGCAGATAAGAAAGGTTGTATCACCGAGTGGTTCTTGTCGCAGGAAAATATTCACCCAGCTACTCTAGAAAGCGCGAGATACTTCCTCTCTATCTATGCGAATACACTGAGAATCTCTTTGCAACCCTTGGAGGTATGGGTGTGCATAGATGGGAACAATCCCCAAGGGATAACTTATCTAGGCATGGTCCCTGACGGAAACTCTAACAGCGACAAAAGTAAGGACATTGAAACTGTTGAAAGAAATTCTATGAGGACTGTGATCTACACCAGCAAGAGTGAGCCCATAACGACTAAAGAAGATCTACCAGAGCTGAGTTTTTTCTTGCGTCATCATCTGTCGTCAAGTTCCTCCACTGCCTTTGTCGAGACCCATGGCTACGCCCTTCATGAGGTGATGGGTTCTTCAAATTCCAATAGTCAAGAATGCAGCAACAGTACAATTGCTGTAGAGTTAACATGGAGGGGGGTTCATTCTCTTCTCCAACCTCATCCGCACTCATGCGACGGTGTTCTCCACATTAAGAGCATTCCAGGGAGTGTCCATCTCGCCACACATTCATTGTACCTGGAATTGGTGCGGGCTGATCATTTTTCCAAGGTCTTAGAGAATGAAGATTTTCCCTGGCCAGCACCTGTAGCTGCCAATGCAAATCCTGTTGCTTCACAAATGGATGCATTCTTTACCAAGTTAAGCTCCAGCAATGTATTTTCACCAACATTTGAAGAAGATCATGAAGAAGGGGAAGAAGAACGCACCTTTGCCGAGGCGTCAATGGCTCACTTAACATTCCAAGAGTTTGCTCGCAAAGATTTGGACTTCACTGAACGACTTTGGCTTTTATTGAAAGATTGCATTGATGAAGATGATCTCATTGCTTCATTGCAAATGTGCAGTGTAGCACTATTCAGTAACAGATGTCAACCAGTCATCCACAGCTCAAACAAGACGTCTATAGCAGTGTTCATTAGGGATTTGCTGCAGTTTGAAACAAAAGAACAGCAGCAGAAACTTCAGAACCAAGCCAAGCAGTTTCTTTCTCCCGATTCAGCCATCAAGTGCTTGGTAGAAATTGGCTGTGAAAAGCTTGCCAGAGATTATACTCAGTATTTCATTCACCAGGAGCTGGCAACCATGGGACAACTGGCAAGCTATTTGGATAACAACGTCCTGCTCCGCACCAGAGTCTCGAACATCAAGAAACTTCATCAGACACTAGAGATGGTTGTTACAGCAAAGTCTGTAACAAGGCTAGGCCATGAAAACCTGCGAGCCTTGACACAGAGTGCTCTTACATATTACCAGTCACACCCTGACAGTCAACAACCTGTGTTCTCCCTGTCACTGCCGGCATTTGGATCGACTTCTGGAGAAGCTGTGAAGAGTATCTGTGCTTCATCTAATCCCGCCGTGTGGTGTGTTGCGATCAGGTCCAAGACAAAGATTGGAAGTCATACCACCATTGTACAGCTAAGTACGAGCGCTCCAGGAAATGCTGGTACTTCTGAAAGCCCTGCTTATGATCTCACTGAACTGAATGATGAAGACTTTGACCCAGACAAGGATAAATTTCACTATTTTCTTTCCTGTGCTAAGCAAGTGTTCATGCCAATTATTCGGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0IJ01	Protein zwilch homolog OS=Xenopus tropicalis OX=8364 GN=zwilch PE=2 SV=1
Q6IRM9	Protein zwilch homolog OS=Xenopus laevis OX=8355 GN=zwilch PE=2 SV=1
A6QM04	Protein zwilch homolog OS=Bos taurus OX=9913 GN=ZWILCH PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008318 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09817 all species →	Zwilch	RZZ complex, subunit zwilch	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018630 all species →	Family	RZZ complex, subunit Zwilch	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15995 all species →	PROTEIN ZWILCH HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007093 all species →	Biological Process	mitotic cell cycle checkpoint signaling	Interproscan
GO:1990423 all species →	Cellular Component	RZZ complex	Interproscan
GO:0007094 all species →	Biological Process	mitotic spindle assembly checkpoint signaling	Interproscan
GO:0034501 all species →	Biological Process	protein localization to kinetochore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11579	ZWILCH; protein zwilch	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.