Gene detail

Detailed information of evm.model.Ap9.2645 in Astrangia poculata

Genomic Location: Ap9:28474383...28518223
NR annotation: XP_027045436.1, protein scribble homolog [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.2645

atgtttcgttgttggctgccctggcgttgtaatcgccagatcgattttcttgatcgaagtcactgcagccttacattcgtacccgatgaagtttaccgctatgatagatccttagaagaactgcttttagatgctaatcaaatcaaggatcttccacggccgttctttcgcttgtacaatctgcgacgattgggtttgagcgacaacgagattgcacgtttacctcctgaagtcggcaacttagcgaaccttcaggagtttgatatcagtagaaatgatatttgcgatataccggacaacataaagttctgcaagagcttaatctccctggacctcagcggtaatcctgtttcaaaacttccagatggctttgcacagctcaagaatcttactactctttgtctaaatgatgtgtctctgatccgattgcctccggacatcggaagtttaacagaactcacagtactggaggccagagaaaacttgatcaagtacctgccagtttccatggaatttttgacaaagcttgaaagactagaccttggatgtaatgaacttgaagaacttccggacattgttggatcattaccaaacctgacagagttgtggttagatggaaacctgttaaaaacattacctccagaaattggaaacctcaagaagctccagatatttgatgtatcagagaacaaaattgaatttttgccagatgaaatttctgggtgcgttggtcttactgacttccacttatcgcaaaatttgcttgaagagcttcccgacacgataggaaaacttaagaaactgcagttggtcaagatcgaccagaaccggcttctttgtctaaccccagcgataggagggctttccagcttgtcagaattaatattaacagaaaatcttcttgaggaaattccatcaacaataggaaaactacacaagttaacacatctaaatttagataggaatcggcttacatctttaccagttgagattggaagctgtacaaaattgagtgttttttcattaagagaaaactggctaatgcgcctgccgtcagaaattggcaactgtagaaatcttcacgttttagatgtttcaggaaacaggttagaatgtcttccgttaagtgttggatcactgcctttgaaggcattgtggttatcagagaaccagtctcaaccagtccttaagcttcaaacagaggatgatgagcagaccaacagcagagtgcttacatgtttcttgttgccgcagcaaggccttggaagtttagagatgcttacaaatgatctgacacatgggtttgggatggataatcttgcaatggaagaaactgaggagatagaacggccgcgcagtggaagtgcaccagctgtacagtttgcagatgattcaggcggagagagtgataaagaaactcagttcatcagacatgacacgccgcacccaagagatctgaaagctcgtcatccaaagataacgatgcacaaaattaggggctccgatcacttaccagtggatggcgtagttatcaaatcacggaagtcattcacagatgaggaaagtggatcagattcggaatttcgccctgggagaagaacaagtttcgaagagaagatcagggctgctgaaaagaaaaaggaggcaatgcatgaaactgtcagtgaaaagaagggagtgggttttgcagtggaaacacctgcgtcacctgaagagaacaacaaagaagctatggaagagcatgcttcagggtctgacgatgatggtgaaagggaggcgaaaataagatttgaaggcgaagaacatcctgaaactgaaagacacgacaagttacggcggcgagacacacctcattatttgaaaaacaaaaggattgatctccagtctaatgaccaagataaagttatggagataattgccaaggcagggagccgtgatggggaggaggaacagaatgatgagttgaatgaagatggcagtccagatggagataatgaagagggtccagcgctgaagagaaagccgacgcctcctaaagggtttggtcgccgtgctagcgaggaggaaaaagccgacactgaaaatgacgaacaggaacttgtcacggttacgaaagtagtggaggagattgagtacacgatccatcgtaacaacaagggacttggaatcaacattgctggtgggaaaggttcaactccatatgttggaaatgacgagggaatttttatttcgaagatttctgaaaatggtcctgcgggtcaggatggaattctcaaaacgggcgacaagattatgaagtcctgcagtaagcacttggctcgactcagacttaaccttaccttctatctgccagtaaatgtaagagaaagggaagatctggagaagagaacagtggtgaaatcgtccagggaaaacctagtggtgtcagatgatgcggatgaaattgatcaagctcttgaagaagcttttacgaaggaagaagttaacgaggttcaccaggaaccagaaattgaacaaccaaaggttgctgaagaacctccaaaggaagaaaccaagaaggttggcgtgcgctttgctccagagccagaaatggaagatattcaaaccaaaacggagaaagagactatcacattaaagcgaggaggcgagaagggcctggggtttagcattgctgggggtcgtggatcgacgccgtacaaggatggcgacgcgggagttttcatttccaagattgccgagggcggaacagcagagcgagatgggagacttgaagttggagataaagtgctttcgattaacggtaaagacatgaaaatcgctcggcatgaagacgccgtcgccatgttgacaggcggactctcttacgtcacgcttgtcgttgttcgtgaacgcgttatcaacaagagaatgttaccgctgtctaaactgcaggatcagtcgttacttaacaaacgactggcgaagcctgagatgaaccacataactccagagaaaccagaagtcaaccatacggacaagaatggagccgaggacctcgatattgaggaagtcgttttaaagaaaggaaacaaccctttaggatttagcattgttggaggatctgatcatgcaagtcacccgtttggtatggacgaacctgggatatttatttctaagattgttccaaccggagttgcagctacaacgcatcttagagtcggagataggatgttaatggtaaatggaaaggacatgagaaactcgactcatcaagaagctgttgcagcactgatagcaaatgtttcactcataaaacttctcgttcgccatgatccaccgcctaaaggtcttcaggaggttcatttgcataaaggtccaggagagagactggggatcagtataagaggtggcgccaaaggacatccgggaaacccgttagacaaaacagatgaaggaatattcgtgtctaaagtgaatgaaggtggcgtggccttcaaagatggacgccttaaagttggacaaagattgctagaggtcaacggtaccagtctactcggcgccacgcatctagaagccgtgcgctcgctgagagggattggggataatttatcgctactggtgtgtgatgggtttgacccggctgacgtgcccgcgggacaacatgcagcttggcaagccagtcccgtggcaacgataagcggaaaatctcagagccaagagtctttggaacgtgatctaccttctaacgaaagagcttatgatgacatcagaagagaaatcaagagacaggaggaagaggctagaaaggaagcagaacggtgggagagagaggaaaaggaaagacaagaagcgcttcgaaaacgattagaagataccaaaggcataggagaggagaaaactggactaaacagggcagttacaggatcagaacatgcacagagagatgccgaggaagctgaaaagatgaaaatggacaatagacgtcaagcaaacagcgatacgtcgacggatccaaaagcgtcctcgccacaggctccaaaacgcgccctaaccgcgtctgaacgacgcgccctcgaggcggagaagcgtgcggcattgagacaacagcgcatgcgtgaactcgaagaagacgcattgaaggcgcaagtggttattgcgcaagtcaaagcaatgtccgccacatcgctcgaggccctcgcggtcaattcaccggaagcagacagaaaatccagcgcttctgataatgaacttcacgacggcagctccgctggaggcccggggcgaagatccagcggttcttccacgaaatcgacgtaa

Transcript

evm.model.Ap9.2645

ATGTTTCGTTGTTGGCTGCCCTGGCGTTGTAATCGCCAGATCGATTTTCTTGATCGAAGTCACTGCAGCCTTACATTCGTACCCGATGAAGTTTACCGCTATGATAGATCCTTAGAAGAACTGCTTTTAGATGCTAATCAAATCAAGGATCTTCCACGGCCGTTCTTTCGCTTGTACAATCTGCGACGATTGGGTTTGAGCGACAACGAGATTGCACGTTTACCTCCTGAAGTCGGCAACTTAGCGAACCTTCAGGAGTTTGATATCAGTAGAAATGATATTTGCGATATACCGGACAACATAAAGTTCTGCAAGAGCTTAATCTCCCTGGACCTCAGCGGTAATCCTGTTTCAAAACTTCCAGATGGCTTTGCACAGCTCAAGAATCTTACTACTCTTTGTCTAAATGATGTGTCTCTGATCCGATTGCCTCCGGACATCGGAAGTTTAACAGAACTCACAGTACTGGAGGCCAGAGAAAACTTGATCAAGTACCTGCCAGTTTCCATGGAATTTTTGACAAAGCTTGAAAGACTAGACCTTGGATGTAATGAACTTGAAGAACTTCCGGACATTGTTGGATCATTACCAAACCTGACAGAGTTGTGGTTAGATGGAAACCTGTTAAAAACATTACCTCCAGAAATTGGAAACCTCAAGAAGCTCCAGATATTTGATGTATCAGAGAACAAAATTGAATTTTTGCCAGATGAAATTTCTGGGTGCGTTGGTCTTACTGACTTCCACTTATCGCAAAATTTGCTTGAAGAGCTTCCCGACACGATAGGAAAACTTAAGAAACTGCAGTTGGTCAAGATCGACCAGAACCGGCTTCTTTGTCTAACCCCAGCGATAGGAGGGCTTTCCAGCTTGTCAGAATTAATATTAACAGAAAATCTTCTTGAGGAAATTCCATCAACAATAGGAAAACTACACAAGTTAACACATCTAAATTTAGATAGGAATCGGCTTACATCTTTACCAGTTGAGATTGGAAGCTGTACAAAATTGAGTGTTTTTTCATTAAGAGAAAACTGGCTAATGCGCCTGCCGTCAGAAATTGGCAACTGTAGAAATCTTCACGTTTTAGATGTTTCAGGAAACAGGTTAGAATGTCTTCCGTTAAGTGTTGGATCACTGCCTTTGAAGGCATTGTGGTTATCAGAGAACCAGTCTCAACCAGTCCTTAAGCTTCAAACAGAGGATGATGAGCAGACCAACAGCAGAGTGCTTACATGTTTCTTGTTGCCGCAGCAAGGCCTTGGAAGTTTAGAGATGCTTACAAATGATCTGACACATGGGTTTGGGATGGATAATCTTGCAATGGAAGAAACTGAGGAGATAGAACGGCCGCGCAGTGGAAGTGCACCAGCTGTACAGTTTGCAGATGATTCAGGCGGAGAGAGTGATAAAGAAACTCAGTTCATCAGACATGACACGCCGCACCCAAGAGATCTGAAAGCTCGTCATCCAAAGATAACGATGCACAAAATTAGGGGCTCCGATCACTTACCAGTGGATGGCGTAGTTATCAAATCACGGAAGTCATTCACAGATGAGGAAAGTGGATCAGATTCGGAATTTCGCCCTGGGAGAAGAACAAGTTTCGAAGAGAAGATCAGGGCTGCTGAAAAGAAAAAGGAGGCAATGCATGAAACTGTCAGTGAAAAGAAGGGAGTGGGTTTTGCAGTGGAAACACCTGCGTCACCTGAAGAGAACAACAAAGAAGCTATGGAAGAGCATGCTTCAGGGTCTGACGATGATGGTGAAAGGGAGGCGAAAATAAGATTTGAAGGCGAAGAACATCCTGAAACTGAAAGACACGACAAGTTACGGCGGCGAGACACACCTCATTATTTGAAAAACAAAAGGATTGATCTCCAGTCTAATGACCAAGATAAAGTTATGGAGATAATTGCCAAGGCAGGGAGCCGTGATGGGGAGGAGGAACAGAATGATGAGTTGAATGAAGATGGCAGTCCAGATGGAGATAATGAAGAGGGTCCAGCGCTGAAGAGAAAGCCGACGCCTCCTAAAGGGTTTGGTCGCCGTGCTAGCGAGGAGGAAAAAGCCGACACTGAAAATGACGAACAGGAACTTGTCACGGTTACGAAAGTAGTGGAGGAGATTGAGTACACGATCCATCGTAACAACAAGGGACTTGGAATCAACATTGCTGGTGGGAAAGGTTCAACTCCATATGTTGGAAATGACGAGGGAATTTTTATTTCGAAGATTTCTGAAAATGGTCCTGCGGGTCAGGATGGAATTCTCAAAACGGGCGACAAGATTATGAAGTCCTGCAGTAAGCACTTGGCTCGACTCAGACTTAACCTTACCTTCTATCTGCCAGTAAATGTAAGAGAAAGGGAAGATCTGGAGAAGAGAACAGTGGTGAAATCGTCCAGGGAAAACCTAGTGGTGTCAGATGATGCGGATGAAATTGATCAAGCTCTTGAAGAAGCTTTTACGAAGGAAGAAGTTAACGAGGTTCACCAGGAACCAGAAATTGAACAACCAAAGGTTGCTGAAGAACCTCCAAAGGAAGAAACCAAGAAGGTTGGCGTGCGCTTTGCTCCAGAGCCAGAAATGGAAGATATTCAAACCAAAACGGAGAAAGAGACTATCACATTAAAGCGAGGAGGCGAGAAGGGCCTGGGGTTTAGCATTGCTGGGGGTCGTGGATCGACGCCGTACAAGGATGGCGACGCGGGAGTTTTCATTTCCAAGATTGCCGAGGGCGGAACAGCAGAGCGAGATGGGAGACTTGAAGTTGGAGATAAAGTGCTTTCGATTAACGGTAAAGACATGAAAATCGCTCGGCATGAAGACGCCGTCGCCATGTTGACAGGCGGACTCTCTTACGTCACGCTTGTCGTTGTTCGTGAACGCGTTATCAACAAGAGAATGTTACCGCTGTCTAAACTGCAGGATCAGTCGTTACTTAACAAACGACTGGCGAAGCCTGAGATGAACCACATAACTCCAGAGAAACCAGAAGTCAACCATACGGACAAGAATGGAGCCGAGGACCTCGATATTGAGGAAGTCGTTTTAAAGAAAGGAAACAACCCTTTAGGATTTAGCATTGTTGGAGGATCTGATCATGCAAGTCACCCGTTTGGTATGGACGAACCTGGGATATTTATTTCTAAGATTGTTCCAACCGGAGTTGCAGCTACAACGCATCTTAGAGTCGGAGATAGGATGTTAATGGTAAATGGAAAGGACATGAGAAACTCGACTCATCAAGAAGCTGTTGCAGCACTGATAGCAAATGTTTCACTCATAAAACTTCTCGTTCGCCATGATCCACCGCCTAAAGGTCTTCAGGAGGTTCATTTGCATAAAGGTCCAGGAGAGAGACTGGGGATCAGTATAAGAGGTGGCGCCAAAGGACATCCGGGAAACCCGTTAGACAAAACAGATGAAGGAATATTCGTGTCTAAAGTGAATGAAGGTGGCGTGGCCTTCAAAGATGGACGCCTTAAAGTTGGACAAAGATTGCTAGAGGTCAACGGTACCAGTCTACTCGGCGCCACGCATCTAGAAGCCGTGCGCTCGCTGAGAGGGATTGGGGATAATTTATCGCTACTGGTGTGTGATGGGTTTGACCCGGCTGACGTGCCCGCGGGACAACATGCAGCTTGGCAAGCCAGTCCCGTGGCAACGATAAGCGGAAAATCTCAGAGCCAAGAGTCTTTGGAACGTGATCTACCTTCTAACGAAAGAGCTTATGATGACATCAGAAGAGAAATCAAGAGACAGGAGGAAGAGGCTAGAAAGGAAGCAGAACGGTGGGAGAGAGAGGAAAAGGAAAGACAAGAAGCGCTTCGAAAACGATTAGAAGATACCAAAGGCATAGGAGAGGAGAAAACTGGACTAAACAGGGCAGTTACAGGATCAGAACATGCACAGAGAGATGCCGAGGAAGCTGAAAAGATGAAAATGGACAATAGACGTCAAGCAAACAGCGATACGTCGACGGATCCAAAAGCGTCCTCGCCACAGGCTCCAAAACGCGCCCTAACCGCGTCTGAACGACGCGCCCTCGAGGCGGAGAAGCGTGCGGCATTGAGACAACAGCGCATGCGTGAACTCGAAGAAGACGCATTGAAGGCGCAAGTGGTTATTGCGCAAGTCAAAGCAATGTCCGCCACATCGCTCGAGGCCCTCGCGGTCAATTCACCGGAAGCAGACAGAAAATCCAGCGCTTCTGATAATGAACTTCACGACGGCAGCTCCGCTGGAGGCCCGGGGCGAAGATCCAGCGGTTCTTCCACGAAATCGACGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4H4B6	Protein scribble homolog OS=Danio rerio OX=7955 GN=scrib PE=1 SV=1
A0A8P0N4K0	Protein scribble homolog OS=Canis lupus familiaris OX=9615 GN=SCRIB PE=1 SV=1
Q80U72	Protein scribble homolog OS=Mus musculus OX=10090 GN=Scrib PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002000 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050614 all species →	Family	Synaptic Scaffolding LAP/MAGUK Families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23119 all species →	DISCS LARGE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0009790 all species →	Biological Process	embryo development	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0097120 all species →	Biological Process	receptor localization to synapse	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16175	SCRIB; protein scribble	-	Human papillomavirus infection	ko05165	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.