Gene detail

Detailed information of evm.model.Ap9.2731 in Astrangia poculata

Genomic Location: Ap9:29436266...29454553
NR annotation: XP_020623309.1, general vesicular transport factor p115-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.2731

atggagtatttatcgagaggattcaagtcggttttgggcaatcaacaagccggttctcagccgtccgctcacgagacggttgaaagattgtgtgaccgggttgcttcctctacgcttctggaagacaggagagatgcagtacgagctctcaaatcactttcaaagaaatttcgtcttgaagttggaacacagtcaatggatttgctgataaatgttttacaaacagacagaaatgatacagaaatcactggattggctttgcaaactctcagtaacctgctctcagctgatccagctcaagatgaaggtggcagggatgctggtcagacggcttccgatgttgaattaggagttcagttcacagagatctttatcaagaaaagtgataatgtcactttgttacttggtctgttagaggaatacgaatttcaagtaagatggccaacagttaaacttctaacagtattgctgacaaataaaagtcatcagcttcagcagtgcattttagtaagccctatgggtgtatccagactgatggacttactgtctgacagccgagaaatcatcagaaatgagggccttttattgttgattcaactgaccaagtctaatgcagccatacagaaaattgttgcctttgagaatgcatttgatagacttcttgaaatcatcacagaggaaggctacagtgacgggggtatagtagtggaagactgtttgttgctgatgcaaaatcttctgaaattaaatgtttcaaaccaaaatttcttcagagaaggaagttatgttcaaagacttactccattttttgagctggaacaagttccaacaccagaaccctcagaaaatcaagaaaactcttggtcaacccaaaaagtatcaaatatcaagcttatgttacagcttgccagagtacttgtgtcgccagataatcctcaacaagcaacagcaacttgtcagaaaataatgaatcagtgtgggttgttgcgattactttgtagtatactcatgtcaactggaattcctgctgacattctcactgagactatcaacacagtatcagaagtgataagaggcttcccagcaaatcaagaatacttctctcaagtcaatgctccatcgaaccctcctagtccagccattgtagtccttcttatgtcaatgattaatgacaagcagccattcagtcttcgttgtgctgtcttgtattgctttcagtgttatctttacaagaatgagcagggacagaatgagattgtaaccacattgctgccatcttcagctgctgctgctaccaacatatcagcaggacagttactctgtgctggtttgttcagtccagacccattgtccaactggtgtgcggcagtggctttgtctcactgtttaaaggggaaccccacacagaaggaacagcttcttagagtacaactagccacaagtgttggaaatccgcctgtttccttgttacagcaatgtaccaacatgctttcacagggcggggagattcagacacgtgttggcttgttgttgttgctgtgttcatggttgtccaattgttcactcgctgttgctcattttcttcataattctgctaatattccatatctcatggctcaagttgaagctcatggcgaggaagctgatagacttgtgggcgccctttgtgctcttcttttaggaatttgtttggacaacaatgacaattcagtagctacttgtcagaaggacgatcttcgtaatttaataatcaaaagaataggaattgacaatcttctggacaagatcagttttatatccaaatcagagtactttactgcagctgtgaaatcacccgagattaaagttgaatctgagaaacatgttttgtttgatcatgaatttaccaagctgttcaagaagttggaagctgctgtcacgaaagctatcgaagaagaaccttcacaccaacaaatggcgaaccatgttaacggaaaaccacctcaaggaatggagaaccatgactctattgtatcatcgtacaaagaacttatcagagaacaggatgaagaaatcggaaaacttaaatcaagatacggtgatattgaatcatcatataatcaggcgcaagtccagattcaacaacaatctcaagagattcaacagcttcgtgaacaacttctcattgctcagaattttaaacctcagacagcagtgtcggactctttcttcactgataacgaggaagtaacgagtcttaggaatcaagtgagtgatttacaacagaaacaagactcgctacaggagcagctcagaactaaagatgaaaagatagaaaagttggagaaagatctggaggtcagccaggcgtcattagcagtggctcacgcagccgcagaactggcgagctccgacacgtcagatttgtcatcagtgccagcaagccttaccagtcagcagctggatgagttagcgcagctgaggcgaaccgtgacgtcactacacgaggagctggacgtgttgagatcaatgaacacagagctggagaatgaaatagaatcagtgagagaggagagtctgaagacgccaaccaacagcacagatgaagtgaaggccgagttggagaacgcacgaaaagaaagccacgacaaaattaaacttttagaagataagttagctgcaacagagaaagaaatgaatagaatagtacaggagaaagcggatctagacaaggaacacgaagatctcctggtgatgttaactgaacaagatgctaaagttgctaaatacaagaaactggcgagagaaggtggacaagaagtaagtgaggacgacgatgaagattttgaagatgatgacgatgatgatgacgacgatgatgaagatgatgacgaaggcaatgaagatgacgagaatgaagaggaatctggtgacgaaaatgtcggcaatgaacaagaaacagaacatcaaagtacagacaacacagaactcgatgaagaagaacttacgtga

Transcript

evm.model.Ap9.2731

ATGGAGTATTTATCGAGAGGATTCAAGTCGGTTTTGGGCAATCAACAAGCCGGTTCTCAGCCGTCCGCTCACGAGACGGTTGAAAGATTGTGTGACCGGGTTGCTTCCTCTACGCTTCTGGAAGACAGGAGAGATGCAGTACGAGCTCTCAAATCACTTTCAAAGAAATTTCGTCTTGAAGTTGGAACACAGTCAATGGATTTGCTGATAAATGTTTTACAAACAGACAGAAATGATACAGAAATCACTGGATTGGCTTTGCAAACTCTCAGTAACCTGCTCTCAGCTGATCCAGCTCAAGATGAAGGTGGCAGGGATGCTGGTCAGACGGCTTCCGATGTTGAATTAGGAGTTCAGTTCACAGAGATCTTTATCAAGAAAAGTGATAATGTCACTTTGTTACTTGGTCTGTTAGAGGAATACGAATTTCAAGTAAGATGGCCAACAGTTAAACTTCTAACAGTATTGCTGACAAATAAAAGTCATCAGCTTCAGCAGTGCATTTTAGTAAGCCCTATGGGTGTATCCAGACTGATGGACTTACTGTCTGACAGCCGAGAAATCATCAGAAATGAGGGCCTTTTATTGTTGATTCAACTGACCAAGTCTAATGCAGCCATACAGAAAATTGTTGCCTTTGAGAATGCATTTGATAGACTTCTTGAAATCATCACAGAGGAAGGCTACAGTGACGGGGGTATAGTAGTGGAAGACTGTTTGTTGCTGATGCAAAATCTTCTGAAATTAAATGTTTCAAACCAAAATTTCTTCAGAGAAGGAAGTTATGTTCAAAGACTTACTCCATTTTTTGAGCTGGAACAAGTTCCAACACCAGAACCCTCAGAAAATCAAGAAAACTCTTGGTCAACCCAAAAAGTATCAAATATCAAGCTTATGTTACAGCTTGCCAGAGTACTTGTGTCGCCAGATAATCCTCAACAAGCAACAGCAACTTGTCAGAAAATAATGAATCAGTGTGGGTTGTTGCGATTACTTTGTAGTATACTCATGTCAACTGGAATTCCTGCTGACATTCTCACTGAGACTATCAACACAGTATCAGAAGTGATAAGAGGCTTCCCAGCAAATCAAGAATACTTCTCTCAAGTCAATGCTCCATCGAACCCTCCTAGTCCAGCCATTGTAGTCCTTCTTATGTCAATGATTAATGACAAGCAGCCATTCAGTCTTCGTTGTGCTGTCTTGTATTGCTTTCAGTGTTATCTTTACAAGAATGAGCAGGGACAGAATGAGATTGTAACCACATTGCTGCCATCTTCAGCTGCTGCTGCTACCAACATATCAGCAGGACAGTTACTCTGTGCTGGTTTGTTCAGTCCAGACCCATTGTCCAACTGGTGTGCGGCAGTGGCTTTGTCTCACTGTTTAAAGGGGAACCCCACACAGAAGGAACAGCTTCTTAGAGTACAACTAGCCACAAGTGTTGGAAATCCGCCTGTTTCCTTGTTACAGCAATGTACCAACATGCTTTCACAGGGCGGGGAGATTCAGACACGTGTTGGCTTGTTGTTGTTGCTGTGTTCATGGTTGTCCAATTGTTCACTCGCTGTTGCTCATTTTCTTCATAATTCTGCTAATATTCCATATCTCATGGCTCAAGTTGAAGCTCATGGCGAGGAAGCTGATAGACTTGTGGGCGCCCTTTGTGCTCTTCTTTTAGGAATTTGTTTGGACAACAATGACAATTCAGTAGCTACTTGTCAGAAGGACGATCTTCGTAATTTAATAATCAAAAGAATAGGAATTGACAATCTTCTGGACAAGATCAGTTTTATATCCAAATCAGAGTACTTTACTGCAGCTGTGAAATCACCCGAGATTAAAGTTGAATCTGAGAAACATGTTTTGTTTGATCATGAATTTACCAAGCTGTTCAAGAAGTTGGAAGCTGCTGTCACGAAAGCTATCGAAGAAGAACCTTCACACCAACAAATGGCGAACCATGTTAACGGAAAACCACCTCAAGGAATGGAGAACCATGACTCTATTGTATCATCGTACAAAGAACTTATCAGAGAACAGGATGAAGAAATCGGAAAACTTAAATCAAGATACGGTGATATTGAATCATCATATAATCAGGCGCAAGTCCAGATTCAACAACAATCTCAAGAGATTCAACAGCTTCGTGAACAACTTCTCATTGCTCAGAATTTTAAACCTCAGACAGCAGTGTCGGACTCTTTCTTCACTGATAACGAGGAAGTAACGAGTCTTAGGAATCAAGTGAGTGATTTACAACAGAAACAAGACTCGCTACAGGAGCAGCTCAGAACTAAAGATGAAAAGATAGAAAAGTTGGAGAAAGATCTGGAGGTCAGCCAGGCGTCATTAGCAGTGGCTCACGCAGCCGCAGAACTGGCGAGCTCCGACACGTCAGATTTGTCATCAGTGCCAGCAAGCCTTACCAGTCAGCAGCTGGATGAGTTAGCGCAGCTGAGGCGAACCGTGACGTCACTACACGAGGAGCTGGACGTGTTGAGATCAATGAACACAGAGCTGGAGAATGAAATAGAATCAGTGAGAGAGGAGAGTCTGAAGACGCCAACCAACAGCACAGATGAAGTGAAGGCCGAGTTGGAGAACGCACGAAAAGAAAGCCACGACAAAATTAAACTTTTAGAAGATAAGTTAGCTGCAACAGAGAAAGAAATGAATAGAATAGTACAGGAGAAAGCGGATCTAGACAAGGAACACGAAGATCTCCTGGTGATGTTAACTGAACAAGATGCTAAAGTTGCTAAATACAAGAAACTGGCGAGAGAAGGTGGACAAGAAGTAAGTGAGGACGACGATGAAGATTTTGAAGATGATGACGATGATGATGACGACGATGATGAAGATGATGACGAAGGCAATGAAGATGACGAGAATGAAGAGGAATCTGGTGACGAAAATGTCGGCAATGAACAAGAAACAGAACATCAAAGTACAGACAACACAGAACTCGATGAAGAAGAACTTACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60763	General vesicular transport factor p115 OS=Homo sapiens OX=9606 GN=USO1 PE=1 SV=2
P41541	General vesicular transport factor p115 OS=Bos taurus OX=9913 GN=USO1 PE=1 SV=1
Q9Z1Z0	General vesicular transport factor p115 OS=Mus musculus OX=10090 GN=Uso1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004575 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04869 all species →	Uso1_p115_head	Uso1 / p115 like vesicle tethering protein, head region	Repeat	Interproscan
PF18770 all species →	Arm_vescicular	Armadillo tether-repeat of vescicular transport factor	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006953 all species →	Domain	Vesicle tethering protein Uso1/P115-like, head domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR041209 all species →	Repeat	Vesicle tethering protein p115, armadillo tether-repeat	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10013 all species →	GENERAL VESICULAR TRANSPORT FACTOR P115	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0048280 all species →	Biological Process	vesicle fusion with Golgi apparatus	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005795 all species →	Cellular Component	Golgi stack	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0012507 all species →	Cellular Component	ER to Golgi transport vesicle membrane	Interproscan
GO:0045056 all species →	Biological Process	transcytosis	Interproscan
GO:0048211 all species →	Biological Process	Golgi vesicle docking	Interproscan
GO:0061025 all species →	Biological Process	membrane fusion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20361	USO1; intracellular protein transport protein USO1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.