Gene detail

Detailed information of evm.model.Ap9.2764 in Astrangia poculata

Genomic Location: Ap9:29770897...29776576
NR annotation: XP_020623271.1, extensin-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.2764

atggaaacgtatcaaggttgtacaccaggatttcctcctctccctcaaggctgggagataaaagtggaccctggttctggaaggccgttctttatcgatcataagacaagaaccacttcttgggaagatccaagaacacagaagctttattcggcacctggtggaaatatggaaaaccagagtccagcccaggtgtaccaaatgccgtcctcaaatcctggtcagcaatatcagactccagtaccagcttctggccaatcttaccaaatgcctttgcctaatcaaggacaagcttaccagaaccaaatgtcaaatcctggtcaagcttaccaaatgccatctggacaaccaaaccgactgccatctggtctaccaaaccaaatgccacccgggcagcaaaaccagatgccgcctggccagccaaaccaattgcaacctggacagcctcttggccaaccttatgaagcaaaaccagtaattcctggtcaatcattgcactctacagggtcacctctaagtcagccatatcagacttcaatgcctactcctagtcaagcctaccaaatgccgccacaaaacacaagtcagacttaccaggtaccaccagcctcaatgggaactcagcaaggtgtgacatcaaaacctgccagtggtctttaccagacgtcggcatcaggtcaaccttatcaagtaccaacctcacatcctggccaaccatatcagaccctgccatcaaaccctgagcaggcttatcaacctccatcttcaaatcctggtcaagtgcacccagatgccagatcacttcctggtcagccaatgcagatgcaggtgccacctccacaaacaagtcaaggatacccaaccccggcatcagcttctggtcaactataccaggtaccatctcagatgcaggtgcgtcgaccatatcaagcaccgctgcaaagccccatccagggtccaccacaacccactggtcaggcatactaccaagcaccagcacaagcaagttatcagccatatcaaacaccaggacagcctcctggccaagcatatcaggggcaagtacagcagccatacccagtggataatactcaaaacaaaatgccaatacctgcttcagttggtgcaagtactccacagcatcagcagcaacagcttgcaatgccgccatcccctgggcaacagtcaccaggtataccacctcagtatccataccaagctaactattactcctcacctcatgcgcagaatgtccctggaaatagggcactgaaacaagaaaaccaaggaaatgtgccatctccagttgttggacaaccttatcagacattaccagctcacatgacacaaggacaaaatcagcaggatggaagacccccatcttatacctcacctgtccaaccacaagctccccactggacacctccgtttgctagtccggtgccatcatcagtttctggtcacatgaccagcccataccatggaacgcaaccaatgtcattcgcacctgaacagtcagtgagtcggcagtcacaatctcagaatccaccttctggttaccctgttggttcatacccaagtggtgcaggatacgctggtcaacagccagtgtcgcgctccattccaccaaacagacagccctatgctcaatccccttcacaagcgtatggacctagttaccaccagtcaggtctaactgatcctagaagtcaatatatagctcgtagatcaccttcgacagatgctaaaataagttctattgatacactgctctgtcgtgcagaggaattggaaccaagagtgttgggattttcaggaagaagaggtgatagagagtttatttttctagatgagcaactaaccaaattaattttggatcttgataaagtacagactgatggattagaagatgtacgactggcgcggaagtctgcagtccaaagaatacagttcttaattaatgctttagaaacaaaaggctaa

Transcript

evm.model.Ap9.2764

ATGGAAACGTATCAAGGTTGTACACCAGGATTTCCTCCTCTCCCTCAAGGCTGGGAGATAAAAGTGGACCCTGGTTCTGGAAGGCCGTTCTTTATCGATCATAAGACAAGAACCACTTCTTGGGAAGATCCAAGAACACAGAAGCTTTATTCGGCACCTGGTGGAAATATGGAAAACCAGAGTCCAGCCCAGGTGTACCAAATGCCGTCCTCAAATCCTGGTCAGCAATATCAGACTCCAGTACCAGCTTCTGGCCAATCTTACCAAATGCCTTTGCCTAATCAAGGACAAGCTTACCAGAACCAAATGTCAAATCCTGGTCAAGCTTACCAAATGCCATCTGGACAACCAAACCGACTGCCATCTGGTCTACCAAACCAAATGCCACCCGGGCAGCAAAACCAGATGCCGCCTGGCCAGCCAAACCAATTGCAACCTGGACAGCCTCTTGGCCAACCTTATGAAGCAAAACCAGTAATTCCTGGTCAATCATTGCACTCTACAGGGTCACCTCTAAGTCAGCCATATCAGACTTCAATGCCTACTCCTAGTCAAGCCTACCAAATGCCGCCACAAAACACAAGTCAGACTTACCAGGTACCACCAGCCTCAATGGGAACTCAGCAAGGTGTGACATCAAAACCTGCCAGTGGTCTTTACCAGACGTCGGCATCAGGTCAACCTTATCAAGTACCAACCTCACATCCTGGCCAACCATATCAGACCCTGCCATCAAACCCTGAGCAGGCTTATCAACCTCCATCTTCAAATCCTGGTCAAGTGCACCCAGATGCCAGATCACTTCCTGGTCAGCCAATGCAGATGCAGGTGCCACCTCCACAAACAAGTCAAGGATACCCAACCCCGGCATCAGCTTCTGGTCAACTATACCAGGTACCATCTCAGATGCAGGTGCGTCGACCATATCAAGCACCGCTGCAAAGCCCCATCCAGGGTCCACCACAACCCACTGGTCAGGCATACTACCAAGCACCAGCACAAGCAAGTTATCAGCCATATCAAACACCAGGACAGCCTCCTGGCCAAGCATATCAGGGGCAAGTACAGCAGCCATACCCAGTGGATAATACTCAAAACAAAATGCCAATACCTGCTTCAGTTGGTGCAAGTACTCCACAGCATCAGCAGCAACAGCTTGCAATGCCGCCATCCCCTGGGCAACAGTCACCAGGTATACCACCTCAGTATCCATACCAAGCTAACTATTACTCCTCACCTCATGCGCAGAATGTCCCTGGAAATAGGGCACTGAAACAAGAAAACCAAGGAAATGTGCCATCTCCAGTTGTTGGACAACCTTATCAGACATTACCAGCTCACATGACACAAGGACAAAATCAGCAGGATGGAAGACCCCCATCTTATACCTCACCTGTCCAACCACAAGCTCCCCACTGGACACCTCCGTTTGCTAGTCCGGTGCCATCATCAGTTTCTGGTCACATGACCAGCCCATACCATGGAACGCAACCAATGTCATTCGCACCTGAACAGTCAGTGAGTCGGCAGTCACAATCTCAGAATCCACCTTCTGGTTACCCTGTTGGTTCATACCCAAGTGGTGCAGGATACGCTGGTCAACAGCCAGTGTCGCGCTCCATTCCACCAAACAGACAGCCCTATGCTCAATCCCCTTCACAAGCGTATGGACCTAGTTACCACCAGTCAGGTCTAACTGATCCTAGAAGTCAATATATAGCTCGTAGATCACCTTCGACAGATGCTAAAATAAGTTCTATTGATACACTGCTCTGTCGTGCAGAGGAATTGGAACCAAGAGTGTTGGGATTTTCAGGAAGAAGAGGTGATAGAGAGTTTATTTTTCTAGATGAGCAACTAACCAAATTAATTTTGGATCTTGATAAAGTACAGACTGATGGATTAGAAGATGTACGACTGGCGCGGAAGTCTGCAGTCCAAAGAATACAGTTCTTAATTAATGCTTTAGAAACAAAAGGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BLJ6	BAG domain-containing protein Samui OS=Bombyx mori OX=7091 GN=Samui PE=2 SV=1
O95817	BAG family molecular chaperone regulator 3 OS=Homo sapiens OX=9606 GN=BAG3 PE=1 SV=3
Q9JLV1	BAG family molecular chaperone regulator 3 OS=Mus musculus OX=10090 GN=Bag3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001640 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02179 all species →	BAG	BAG domain	Family	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR003103 all species →	Domain	BAG domain	Interproscan
IPR036533 all species →	Homologous_superfamily	BAG domain superfamily	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

No PANTHER signature was detected for evm.model.Ap9.2764. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.2764.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.