Detailed information of evm.model.Ap9.387 in Astrangia poculata

Genomic Location: Ap9:4161352...4168248
NR annotation: XP_022801232.1, tyrosyl-DNA phosphodiesterase 2-like [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O95551Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens OX=9606 GN=TDP2 PE=1 SV=1
A7YWI9Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus OX=9913 GN=TDP2 PE=2 SV=1
Q5XJA0Tyrosyl-DNA phosphodiesterase 2 OS=Danio rerio OX=7955 GN=tdp2 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005343 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14555
all species →		UBA_4UBA-like domainDomainInterproscan
PF03372
all species →		Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036691
all species →		Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135
all species →		DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR009060
all species →		Homologous_superfamilyUBA-like superfamilyInterproscan
IPR051547
all species →		FamilyTyrosyl-DNA phosphodiesterase 2-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15822
all species →		TRAF AND TNF RECEPTOR-ASSOCIATED PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0003697
all species →		Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan
GO:0016605
all species →		Cellular ComponentPML bodyInterproscan
GO:0070260
all species →		Molecular Function5'-tyrosyl-DNA phosphodiesterase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap9.387.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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