Gene detail

Detailed information of evm.model.Ap9.46 in Astrangia poculata

Genomic Location: Ap9:390805...402432
NR annotation: CAH3162089.1, unnamed protein product, partial [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.46

atgtcacaaacacttcaagaatggggctgcagcggtagctgcgtttcttcacaacattgtcgattaccacgttgtggaaacgtcgtatttccatttacattcagtggatcaggaacggtccaagtacatgtaacattgagccatggtgagcaattctcacgtgttcactcgcctgctgctgtgtgggttgaatcagtcagtacacgtgggttcaaggtgtgtgcacgtgagtcaggcattggaacaaatggaactggagtccttaactggctggctttccaagatcaaccacaactgacacatggaagcgtcagttttaatggcatttggacaacagagactaaatgcgagaaagttacattctctcagagctttggtgcgagaccttctgtgtttgtctcggctaagtacacacgtgacacaaagcctgatgacgcgatgtacgtctggctggagaatgtaaaacccgacagctttgaggtctgcgtccgagagttcttggtgtttgacggcaagcaccaagatactgttgtggactggttcgcattcacaggcaatgggtccgagctaaattttacgaggacaggggaaatttacttccccaacagcggcagtcccacggcggacaataattatggcttctgtcaagaagttcagtataacactactttctatgagaccccagctgtgcttgtttctgtcggtcatcaatatgacggacaagtgaaaagccatattccgccggagaataacattataacagcctgggttgaggaagttcgtctgacatccatgagaatttgtgtaagggacatcgccggatcaggaagtcagcacgaccccatgactgtcagttatgttgtgattggtgacttgaatccatgtttgggcgtagtctgtgaatcgtttggtgtctgtaaaacctacaatgcacatcaagctcgctgtgtgtgttacgaagactgcccttcctatcaagatcccgtgtgtaccgcgaatggtacaacatacgacaacaaatgtctgtacgagcttagcttctgtaagggacatgataataataccgtttatcacccaggaagctgtgagggctttccaattgcgtatggccgtgtaaagcttcttcgagttcccaaatggtctgactcaacctgcaagacagtggcattcccgccataccggttctacccagataaacaagttcatgttcaaataacactgaatcacatgaacttgaatgactcggtaacagttcaccacgctattacctcgtggacggaaaacgtcaatacacgaaattttacagtctgcgccatgcaatctgggaggaatggaaacaactttaatccatttgcgactgtggactggatggcgtatcaaggagcaacgcccgaagtattgacgggaataatcaacgttaaaaaatggtggtctggaacaaattgcgaagatgtgacgtttccaaaggacaagtttaaagaggcgcctgtagttctggtgacgtcagagcaccttaggactggcaacgagtacgattccgcgctgatctggacagaggatgtaaccaaggactcatttaaagtctgtctccgagaattacaaaactttgatggaaaacatgaagatattaatgtgaattggatggcgttttctaaactacacaagccgctcttcactgaacatggctctgtcaagtttccaaacacaaacccaccaacagatgaaaacaacaacgcttactgtgagtttgtgcagtttacacgaggttataacataacaccatcagtcctgatatcagccaatcacagcacaacggccagcggaaactcggcaccagttcacaacggtattactacgtggatcgagaacatgaacgcctctggatttagagcctgtatcaaagagttgtacgagaccagatatgaccctgtgtcagtgaattatgcggtccttacagatatttgtggacctggatggagttattttaacggcttctgctatttcacgagcgaaacctgcacaaactggaccaatgcgctatcaaaatgtcggcaagcaaactccgttcttgttgatgtgaacagcaacgaggaaaatgtgtacatccaacacagacataatggagagaaatcgtggctgggattgaacgacagatcaacagaaggtgactttacttgggcggatattggacgcgcgaactttacaacttgggccagaaatcagcctaataattttagagaagaagattgtgttcacgcccttggtttgaagttgaactacgagtggaatgacgtgaagtgtagcgactgtcatcagtatacttgtaagaaaggtagggaacaaacaaataaataa

Transcript

evm.model.Ap9.46

ATGTCACAAACACTTCAAGAATGGGGCTGCAGCGGTAGCTGCGTTTCTTCACAACATTGTCGATTACCACGTTGTGGAAACGTCGTATTTCCATTTACATTCAGTGGATCAGGAACGGTCCAAGTACATGTAACATTGAGCCATGGTGAGCAATTCTCACGTGTTCACTCGCCTGCTGCTGTGTGGGTTGAATCAGTCAGTACACGTGGGTTCAAGGTGTGTGCACGTGAGTCAGGCATTGGAACAAATGGAACTGGAGTCCTTAACTGGCTGGCTTTCCAAGATCAACCACAACTGACACATGGAAGCGTCAGTTTTAATGGCATTTGGACAACAGAGACTAAATGCGAGAAAGTTACATTCTCTCAGAGCTTTGGTGCGAGACCTTCTGTGTTTGTCTCGGCTAAGTACACACGTGACACAAAGCCTGATGACGCGATGTACGTCTGGCTGGAGAATGTAAAACCCGACAGCTTTGAGGTCTGCGTCCGAGAGTTCTTGGTGTTTGACGGCAAGCACCAAGATACTGTTGTGGACTGGTTCGCATTCACAGGCAATGGGTCCGAGCTAAATTTTACGAGGACAGGGGAAATTTACTTCCCCAACAGCGGCAGTCCCACGGCGGACAATAATTATGGCTTCTGTCAAGAAGTTCAGTATAACACTACTTTCTATGAGACCCCAGCTGTGCTTGTTTCTGTCGGTCATCAATATGACGGACAAGTGAAAAGCCATATTCCGCCGGAGAATAACATTATAACAGCCTGGGTTGAGGAAGTTCGTCTGACATCCATGAGAATTTGTGTAAGGGACATCGCCGGATCAGGAAGTCAGCACGACCCCATGACTGTCAGTTATGTTGTGATTGGTGACTTGAATCCATGTTTGGGCGTAGTCTGTGAATCGTTTGGTGTCTGTAAAACCTACAATGCACATCAAGCTCGCTGTGTGTGTTACGAAGACTGCCCTTCCTATCAAGATCCCGTGTGTACCGCGAATGGTACAACATACGACAACAAATGTCTGTACGAGCTTAGCTTCTGTAAGGGACATGATAATAATACCGTTTATCACCCAGGAAGCTGTGAGGGCTTTCCAATTGCGTATGGCCGTGTAAAGCTTCTTCGAGTTCCCAAATGGTCTGACTCAACCTGCAAGACAGTGGCATTCCCGCCATACCGGTTCTACCCAGATAAACAAGTTCATGTTCAAATAACACTGAATCACATGAACTTGAATGACTCGGTAACAGTTCACCACGCTATTACCTCGTGGACGGAAAACGTCAATACACGAAATTTTACAGTCTGCGCCATGCAATCTGGGAGGAATGGAAACAACTTTAATCCATTTGCGACTGTGGACTGGATGGCGTATCAAGGAGCAACGCCCGAAGTATTGACGGGAATAATCAACGTTAAAAAATGGTGGTCTGGAACAAATTGCGAAGATGTGACGTTTCCAAAGGACAAGTTTAAAGAGGCGCCTGTAGTTCTGGTGACGTCAGAGCACCTTAGGACTGGCAACGAGTACGATTCCGCGCTGATCTGGACAGAGGATGTAACCAAGGACTCATTTAAAGTCTGTCTCCGAGAATTACAAAACTTTGATGGAAAACATGAAGATATTAATGTGAATTGGATGGCGTTTTCTAAACTACACAAGCCGCTCTTCACTGAACATGGCTCTGTCAAGTTTCCAAACACAAACCCACCAACAGATGAAAACAACAACGCTTACTGTGAGTTTGTGCAGTTTACACGAGGTTATAACATAACACCATCAGTCCTGATATCAGCCAATCACAGCACAACGGCCAGCGGAAACTCGGCACCAGTTCACAACGGTATTACTACGTGGATCGAGAACATGAACGCCTCTGGATTTAGAGCCTGTATCAAAGAGTTGTACGAGACCAGATATGACCCTGTGTCAGTGAATTATGCGGTCCTTACAGATATTTGTGGACCTGGATGGAGTTATTTTAACGGCTTCTGCTATTTCACGAGCGAAACCTGCACAAACTGGACCAATGCGCTATCAAAATGTCGGCAAGCAAACTCCGTTCTTGTTGATGTGAACAGCAACGAGGAAAATGTGTACATCCAACACAGACATAATGGAGAGAAATCGTGGCTGGGATTGAACGACAGATCAACAGAAGGTGACTTTACTTGGGCGGATATTGGACGCGCGAACTTTACAACTTGGGCCAGAAATCAGCCTAATAATTTTAGAGAAGAAGATTGTGTTCACGCCCTTGGTTTGAAGTTGAACTACGAGTGGAATGACGTGAAGTGTAGCGACTGTCATCAGTATACTTGTAAGAAAGGTAGGGAACAAACAAATAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28343	Aggrecan core protein OS=Canis lupus familiaris OX=9615 GN=ACAN PE=2 SV=2
Q28670	Aggrecan core protein OS=Oryctolagus cuniculus OX=9986 GN=ACAN PE=2 SV=2
P13608	Aggrecan core protein OS=Bos taurus OX=9913 GN=ACAN PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR050111 all species →	Family	C-type lectin and snaclec domain-containing protein	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22803 all species →	MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.46.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.