Detailed information of evm.model.Ap9.64 in Astrangia poculata

Genomic Location: Ap9:551709...555608
NR annotation: XP_020631153.1, transmembrane protein 205-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q28GF8Transmembrane protein 205 OS=Xenopus tropicalis OX=8364 GN=tmem205 PE=2 SV=1
A1L2F6Transmembrane protein 205 OS=Danio rerio OX=7955 GN=tmem205 PE=2 SV=1
Q6GPW4Transmembrane protein 205 OS=Xenopus laevis OX=8355 GN=tmem205 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006500 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13664
all species →		DUF4149Domain of unknown function (DUF4149)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR053009
all species →		FamilyXanthocillin Biosynthesis-Associated ProteinInterproscan
IPR025423
all species →		DomainDomain of unknown function DUF4149Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23241
all species →		LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for evm.model.Ap9.64 in Astrangia poculata.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap9.64.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap9.64 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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