Detailed information of evm.model.Ap9.644 in Astrangia poculata

Genomic Location: Ap9:6990709...7001283
NR annotation: CAH3144073.1, unnamed protein product, partial [Porites lobata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9D534Zinc finger C2HC domain-containing protein 1B OS=Mus musculus OX=10090 GN=Zc2hc1b PE=2 SV=1
Q32KN7Zinc finger C2HC domain-containing protein 1B OS=Bos taurus OX=9913 GN=ZC2HC1B PE=2 SV=1
Q618K0Zinc finger C2HC domain-containing protein CBG14627 OS=Caenorhabditis briggsae OX=6238 GN=CBG14627 PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001620 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13913
all species →		zf-C2HC_2zinc-finger of a C2HC-typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049899
all species →		DomainZinc finger, C2HC/C3H-typeInterproscan
IPR026319
all species →		FamilyZinc finger C2HC domain-containing protein 1A/B-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13555
all species →		C2H2 ZINC FINGER CGI-62-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for evm.model.Ap9.644 in Astrangia poculata.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap9.644.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap9.644 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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