Gene detail

Detailed information of evm.model.Ap9.648 in Astrangia poculata

Genomic Location: Ap9:7046077...7061169
NR annotation: CAH3165282.1, unnamed protein product, partial [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.648

atgtcgtccttgcaccattacgcgatgcagttcgttcttgttttcttggttgtttccgttgttgtgccagctgttgaagctctcagtttcaaagcagggaaagacaacatcactaccgtcgcaccagggttgtttgcttgtaagaaaatcttctttccagttcctttctacggcggacaacaagttagtgttctcgcctcagttggccataccgtgaagagtcaaacgccccggaatggtgctgcagtctgggttgaagatgttaaagccagtgaattcacagtttgcgttctcgagtttggggatggatctaacaactctgttcaggttgattggcttgcttttgagaccgctcttcctgattcccagataggtacagcctccttaaacgcttggacaattggaacggaatgcaagaggattgatttccagcagcgcttctcgactttaccaaagatatttgtgacagctactcatcaatttcccaagagacctcaggacgccatggccgtgtgggtggaggacttgcgcgtggacaatttcaaagtttgccttcgtgaagccaagatgtttgatgggcctcatgagaacataaagataaattggatggcgtttacaaatctgagggtaaacaatttcaccttgactgacagtctcgtgttttccaatacaaagtcgccatcttatcaagataactacgctttctgtcaaacaataaacttcacagagccattttatgctcctcctgtcgtgatagtgacaccaaagcacagtgataacaataataattctcatctatctgggtcaagttgcaaagctgttactgcttgggttgagcatacatcaacaacggatgcacgggtgtgtgtgaaaaattacaacagtgacgccaacaataaagatataatcacagttgactacatgatcactggagacttggatccctgcatcgatgtgacatgtcattaccattgtctgtgtaaagcgtgtggacctcatgatgctcgctgcgtttctgtggacagttgtccatcctatcaagaaccggtgtgttcctcaaatggcacaacgttcgataatgagtgtctgtttcaacaggaaatgttacagctgcagctcaactactccatccaacaccctggtagctgcgaaggatttccattccagagagggcgacgtcacatgccacatattcctttactgggatattctcattgtgaagtaattcgcctaaaaccttttgtgttctatcctgacaagccacttgaagttcagatcactgtcaatcatattgacaccagtgaaacgtcctatgtacacgatgcagctgtatcgtgggtcgagaatgtcgcttataaccaatttactgcatgtgtcatggcggcatgttataatgaacgaaagtcaaacgcgaacgtgacagttgattggatgacgtaccagggggcgccagaaggtggtgttgctggggaagtacgaatatcacaatggtggactggaacgacttgtaaagctgtcaatttcccatcgggaaagttttcagtgataccttcagtatttgtaactgcggcgcatcatcatgccggactaaagcgtgacgctgccagtgtgtggatcgaagacgtcacgcaatcttcatttaaagtttgtttgagggagttgcagaactacgcaggatctcacgaagatgttcatgttaaatggttggcgttttcgtctctccacaagcccctcttctcagaacatagctcagtctactttgctaactcccagcatcctcctgcagatttcaacaatgccttctgtaaggatgtccgctttgccaagacttataacagcatcccgaatgtgtttgtttcggcgaaccattcatcaagcggtggaaatcaacaaccagaacacaatggaattactgcttgggtggagtacatcaacaacaccggtgtccgagtttgtttgaaggaactgtacgagacaaaatatgatcctctgtctatatcatacactgtcttgtcagtctcagtggcgtcaagtgctgtgatagttaacagcaatttgcaaggcggtttacatgacgagtactcagatctttcgatagtgatgaagctggctgcaaagaggaaagtaggagttagcggtcggaaaagatttaatacagctaaattgagggatatgggtgtgcaagaagaggtcactgtgacacttaggaacaagtttgaagttcttgctgatgttgatgaagatgatcaggatgttgatagaatgtggcagcactgcaaaagcatctttgcggacacctgcaaagaagtgctaggctacagggagacaacaagaaaggaatggatcagtgaggattacatggaaggggattga

Transcript

evm.model.Ap9.648

ATGTCGTCCTTGCACCATTACGCGATGCAGTTCGTTCTTGTTTTCTTGGTTGTTTCCGTTGTTGTGCCAGCTGTTGAAGCTCTCAGTTTCAAAGCAGGGAAAGACAACATCACTACCGTCGCACCAGGGTTGTTTGCTTGTAAGAAAATCTTCTTTCCAGTTCCTTTCTACGGCGGACAACAAGTTAGTGTTCTCGCCTCAGTTGGCCATACCGTGAAGAGTCAAACGCCCCGGAATGGTGCTGCAGTCTGGGTTGAAGATGTTAAAGCCAGTGAATTCACAGTTTGCGTTCTCGAGTTTGGGGATGGATCTAACAACTCTGTTCAGGTTGATTGGCTTGCTTTTGAGACCGCTCTTCCTGATTCCCAGATAGGTACAGCCTCCTTAAACGCTTGGACAATTGGAACGGAATGCAAGAGGATTGATTTCCAGCAGCGCTTCTCGACTTTACCAAAGATATTTGTGACAGCTACTCATCAATTTCCCAAGAGACCTCAGGACGCCATGGCCGTGTGGGTGGAGGACTTGCGCGTGGACAATTTCAAAGTTTGCCTTCGTGAAGCCAAGATGTTTGATGGGCCTCATGAGAACATAAAGATAAATTGGATGGCGTTTACAAATCTGAGGGTAAACAATTTCACCTTGACTGACAGTCTCGTGTTTTCCAATACAAAGTCGCCATCTTATCAAGATAACTACGCTTTCTGTCAAACAATAAACTTCACAGAGCCATTTTATGCTCCTCCTGTCGTGATAGTGACACCAAAGCACAGTGATAACAATAATAATTCTCATCTATCTGGGTCAAGTTGCAAAGCTGTTACTGCTTGGGTTGAGCATACATCAACAACGGATGCACGGGTGTGTGTGAAAAATTACAACAGTGACGCCAACAATAAAGATATAATCACAGTTGACTACATGATCACTGGAGACTTGGATCCCTGCATCGATGTGACATGTCATTACCATTGTCTGTGTAAAGCGTGTGGACCTCATGATGCTCGCTGCGTTTCTGTGGACAGTTGTCCATCCTATCAAGAACCGGTGTGTTCCTCAAATGGCACAACGTTCGATAATGAGTGTCTGTTTCAACAGGAAATGTTACAGCTGCAGCTCAACTACTCCATCCAACACCCTGGTAGCTGCGAAGGATTTCCATTCCAGAGAGGGCGACGTCACATGCCACATATTCCTTTACTGGGATATTCTCATTGTGAAGTAATTCGCCTAAAACCTTTTGTGTTCTATCCTGACAAGCCACTTGAAGTTCAGATCACTGTCAATCATATTGACACCAGTGAAACGTCCTATGTACACGATGCAGCTGTATCGTGGGTCGAGAATGTCGCTTATAACCAATTTACTGCATGTGTCATGGCGGCATGTTATAATGAACGAAAGTCAAACGCGAACGTGACAGTTGATTGGATGACGTACCAGGGGGCGCCAGAAGGTGGTGTTGCTGGGGAAGTACGAATATCACAATGGTGGACTGGAACGACTTGTAAAGCTGTCAATTTCCCATCGGGAAAGTTTTCAGTGATACCTTCAGTATTTGTAACTGCGGCGCATCATCATGCCGGACTAAAGCGTGACGCTGCCAGTGTGTGGATCGAAGACGTCACGCAATCTTCATTTAAAGTTTGTTTGAGGGAGTTGCAGAACTACGCAGGATCTCACGAAGATGTTCATGTTAAATGGTTGGCGTTTTCGTCTCTCCACAAGCCCCTCTTCTCAGAACATAGCTCAGTCTACTTTGCTAACTCCCAGCATCCTCCTGCAGATTTCAACAATGCCTTCTGTAAGGATGTCCGCTTTGCCAAGACTTATAACAGCATCCCGAATGTGTTTGTTTCGGCGAACCATTCATCAAGCGGTGGAAATCAACAACCAGAACACAATGGAATTACTGCTTGGGTGGAGTACATCAACAACACCGGTGTCCGAGTTTGTTTGAAGGAACTGTACGAGACAAAATATGATCCTCTGTCTATATCATACACTGTCTTGTCAGTCTCAGTGGCGTCAAGTGCTGTGATAGTTAACAGCAATTTGCAAGGCGGTTTACATGACGAGTACTCAGATCTTTCGATAGTGATGAAGCTGGCTGCAAAGAGGAAAGTAGGAGTTAGCGGTCGGAAAAGATTTAATACAGCTAAATTGAGGGATATGGGTGTGCAAGAAGAGGTCACTGTGACACTTAGGAACAAGTTTGAAGTTCTTGCTGATGTTGATGAAGATGATCAGGATGTTGATAGAATGTGGCAGCACTGCAAAAGCATCTTTGCGGACACCTGCAAAGAAGTGCTAGGCTACAGGGAGACAACAAGAAAGGAATGGATCAGTGAGGATTACATGGAAGGGGATTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13866 all species →	SPARC OSTEONECTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005518 all species →	Molecular Function	collagen binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:0050840 all species →	Molecular Function	extracellular matrix binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.648.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.