Gene detail

Detailed information of evm.model.Ap9.764 in Astrangia poculata

Genomic Location: Ap9:8190067...8197235
NR annotation: XP_020615933.1, uncharacterized protein LOC110053953 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.764

atgacggcaaaggatgaatcgatccttcaggaaaacttccgtctcacaaaaaaattgaacaacttgccagaaacagtttccccaaggggaattcagcggggaaaacttgacatccagcaagtgagagttgatggtttccattgtgaatacgtgtcatttaacagcagtttctccagtgtaacacccgtgcgtgtatttacttccattaatcatggaaacgaatcatcaggagtccatgatacggcttttatttgggtggaagatgtgacaacaagcggtttcagggcatgtctcgtgcaaggtggccagggttatggaggtgaaaccaccatcgattggtttgcattgcaaggttcccaatcaggagtgcatcatggagaggctagttttagcctttttactactggaacaaaatgcaatcaggtggcatttccccagaacttttcagtggtacctaaagtccacgtcacagtccaacatggtattccaaaccaaaagcaggacgccatgagtgtttggatagaaagcgtgtccacaagtcagtttgaagtttgcttacgagaatcaaggacatttgatggagctcacaacaatcttgcggtaagctggatggctttcgagcatttccccttttcgtggaaagctaaagagtcgtcagagatcgaatttttggagaaagaagtgccaactgcaaaaaacaattactcactgtgtaagaatgtcagcttttcaagcccattttacgcaccgccagtggtaatcacaaccgttcgtaatggaggcagcaacaacaccaacattgcctgtccgataaaaggtcctttgagcagctggctggaggaagtgacgatatcccactttagagtgtgcatcaaagacagtgcaggatacgacggtcagagaagcaaagttattgtaaactacttggttattggagacctcgatccttgtacaaatgcaagctgcatgtaccacagtcactgcgtagcctcgtcaccgcaccagttcacctgtgtttgtgaagatagctgtccgtcatacgaagaacaggtctgcgcctccaacggtcgcacatttaaaaatgtgtgtttgcttaaacaagaaatctgcagaacacgtagaaattataccaactatcaccctggaagctgtacaggttttccacttcagaaaggaaggcgcaagctccaaaacgttccatcctgggcagaggatcagtgtgaagtcatcaaatttgaaccgtacatattttacccacacaagaaaatatacatacaacttactgtcaaccacctgaattactctgatgccaccttcgtgcatgaagccactacaccgtgggttgaaagcgttaacagcactcagtttacagcatgtgttactcgagctggtaggaatgactatccctcagatagcttcgccacaatagattggatcgcctatcaaggaactccgtctgggggggtggcaggagaggaaatgttctctcgatggtggactgggactagctgtcagacagtcactctcccaaacggaaaattctctaatttaccgacggtatttgcaacagctaaacacttcaggtctcgtcttaagcacgatgctaccagcttgtggctcgaagatgtctcaacgagttcctttaagatttgtctccgggagcttcaaaactttgcgggagttcatgacgacatctctgtgaactggctggcgttcgattcccttcacagaccgctatttaaagaaaataaggacatcaattttcaaaataacgccttgccttctaagaagcataactttgcgttctgccaggatgttagttttcttcggagctacagtaaatccccaaccgtgctgttaacggccaaacattctagcagtggtggaaatgcagctgcagagtgcaacgggatcgtaagctggattgagtttatcactaactcagggtttcgaatttgtgtcaaagaactgtttgttcaacgctttgacccgctgactgtgtcatatgcagtgttagcagacatttgcagtgatgactggacctattttgagggattctgctacaggaaagtatcttcctgtgattcatggagtagcagccaggggacatgtgctacatttggagcaaatcttcccagcattcatagtcaggaagataatgtctatgtccaaagtttacacggcggagaaaattcttggttgggcctctcggatatcaacactgaagggacattcgtgtggagcgatggaacaccgcttgacttccattactgggcgaaacaccagccaaacaattttcacaatgaggactgtgttcatactcttgggttccttcaaggtcataagtacgaatggaacgatgtcaattgcacagactgtcacaagttcacctgcaagaaagattacaatgaatgtcgggaattctccttcgattgtccagtgaacgccacttgtgtgaacagtgatggttcttactcatgtcaatgccctgttggatatcgtctggatggaaataactgcacagacgtggacgagtgcagtgattctgtctgtgacgtcaatgctaactgtcagaatactcccggttatttttcacatggctcgttttcctttgttcttccaggctga

Transcript

evm.model.Ap9.764

ATGACGGCAAAGGATGAATCGATCCTTCAGGAAAACTTCCGTCTCACAAAAAAATTGAACAACTTGCCAGAAACAGTTTCCCCAAGGGGAATTCAGCGGGGAAAACTTGACATCCAGCAAGTGAGAGTTGATGGTTTCCATTGTGAATACGTGTCATTTAACAGCAGTTTCTCCAGTGTAACACCCGTGCGTGTATTTACTTCCATTAATCATGGAAACGAATCATCAGGAGTCCATGATACGGCTTTTATTTGGGTGGAAGATGTGACAACAAGCGGTTTCAGGGCATGTCTCGTGCAAGGTGGCCAGGGTTATGGAGGTGAAACCACCATCGATTGGTTTGCATTGCAAGGTTCCCAATCAGGAGTGCATCATGGAGAGGCTAGTTTTAGCCTTTTTACTACTGGAACAAAATGCAATCAGGTGGCATTTCCCCAGAACTTTTCAGTGGTACCTAAAGTCCACGTCACAGTCCAACATGGTATTCCAAACCAAAAGCAGGACGCCATGAGTGTTTGGATAGAAAGCGTGTCCACAAGTCAGTTTGAAGTTTGCTTACGAGAATCAAGGACATTTGATGGAGCTCACAACAATCTTGCGGTAAGCTGGATGGCTTTCGAGCATTTCCCCTTTTCGTGGAAAGCTAAAGAGTCGTCAGAGATCGAATTTTTGGAGAAAGAAGTGCCAACTGCAAAAAACAATTACTCACTGTGTAAGAATGTCAGCTTTTCAAGCCCATTTTACGCACCGCCAGTGGTAATCACAACCGTTCGTAATGGAGGCAGCAACAACACCAACATTGCCTGTCCGATAAAAGGTCCTTTGAGCAGCTGGCTGGAGGAAGTGACGATATCCCACTTTAGAGTGTGCATCAAAGACAGTGCAGGATACGACGGTCAGAGAAGCAAAGTTATTGTAAACTACTTGGTTATTGGAGACCTCGATCCTTGTACAAATGCAAGCTGCATGTACCACAGTCACTGCGTAGCCTCGTCACCGCACCAGTTCACCTGTGTTTGTGAAGATAGCTGTCCGTCATACGAAGAACAGGTCTGCGCCTCCAACGGTCGCACATTTAAAAATGTGTGTTTGCTTAAACAAGAAATCTGCAGAACACGTAGAAATTATACCAACTATCACCCTGGAAGCTGTACAGGTTTTCCACTTCAGAAAGGAAGGCGCAAGCTCCAAAACGTTCCATCCTGGGCAGAGGATCAGTGTGAAGTCATCAAATTTGAACCGTACATATTTTACCCACACAAGAAAATATACATACAACTTACTGTCAACCACCTGAATTACTCTGATGCCACCTTCGTGCATGAAGCCACTACACCGTGGGTTGAAAGCGTTAACAGCACTCAGTTTACAGCATGTGTTACTCGAGCTGGTAGGAATGACTATCCCTCAGATAGCTTCGCCACAATAGATTGGATCGCCTATCAAGGAACTCCGTCTGGGGGGGTGGCAGGAGAGGAAATGTTCTCTCGATGGTGGACTGGGACTAGCTGTCAGACAGTCACTCTCCCAAACGGAAAATTCTCTAATTTACCGACGGTATTTGCAACAGCTAAACACTTCAGGTCTCGTCTTAAGCACGATGCTACCAGCTTGTGGCTCGAAGATGTCTCAACGAGTTCCTTTAAGATTTGTCTCCGGGAGCTTCAAAACTTTGCGGGAGTTCATGACGACATCTCTGTGAACTGGCTGGCGTTCGATTCCCTTCACAGACCGCTATTTAAAGAAAATAAGGACATCAATTTTCAAAATAACGCCTTGCCTTCTAAGAAGCATAACTTTGCGTTCTGCCAGGATGTTAGTTTTCTTCGGAGCTACAGTAAATCCCCAACCGTGCTGTTAACGGCCAAACATTCTAGCAGTGGTGGAAATGCAGCTGCAGAGTGCAACGGGATCGTAAGCTGGATTGAGTTTATCACTAACTCAGGGTTTCGAATTTGTGTCAAAGAACTGTTTGTTCAACGCTTTGACCCGCTGACTGTGTCATATGCAGTGTTAGCAGACATTTGCAGTGATGACTGGACCTATTTTGAGGGATTCTGCTACAGGAAAGTATCTTCCTGTGATTCATGGAGTAGCAGCCAGGGGACATGTGCTACATTTGGAGCAAATCTTCCCAGCATTCATAGTCAGGAAGATAATGTCTATGTCCAAAGTTTACACGGCGGAGAAAATTCTTGGTTGGGCCTCTCGGATATCAACACTGAAGGGACATTCGTGTGGAGCGATGGAACACCGCTTGACTTCCATTACTGGGCGAAACACCAGCCAAACAATTTTCACAATGAGGACTGTGTTCATACTCTTGGGTTCCTTCAAGGTCATAAGTACGAATGGAACGATGTCAATTGCACAGACTGTCACAAGTTCACCTGCAAGAAAGATTACAATGAATGTCGGGAATTCTCCTTCGATTGTCCAGTGAACGCCACTTGTGTGAACAGTGATGGTTCTTACTCATGTCAATGCCCTGTTGGATATCGTCTGGATGGAAATAACTGCACAGACGTGGACGAGTGCAGTGATTCTGTCTGTGACGTCAATGCTAACTGTCAGAATACTCCCGGTTATTTTTCACATGGCTCGTTTTCCTTTGTTCTTCCAGGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8HY02	CD209 antigen OS=Symphalangus syndactylus OX=9590 GN=CD209 PE=3 SV=1
Q8HY11	C-type lectin domain family 4 member M OS=Symphalangus syndactylus OX=9590 GN=CLEC4M PE=3 SV=1
P20693	Low affinity immunoglobulin epsilon Fc receptor OS=Mus musculus OX=10090 GN=Fcer2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR050111 all species →	Family	C-type lectin and snaclec domain-containing protein	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22803 all species →	MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.764.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.