Gene detail

Detailed information of evm.model.Ap9.81 in Astrangia poculata

Genomic Location: Ap9:654620...679566
NR annotation: APB88092.1, ankyrin [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.81

atgaaggacaaggataaatccgcagcatcattgaaccaggttgatgtggcatttttgagggctgcaagagctgggaaccttgaaaaggttcgaaactttctaaatgaggaaggagacattcacacttgcaatgctaatggcctcaatgcacttcacctgtcatctaaggagggtcatgttgaggtcgtacaagagcttttaaggcgcggagcaggagtcaacttcaccaccaagaaaggaaacacagcacttcatattgcatcacttgctgggcagaaaccggcagtggaggttttattggaatctggtgcctctgtaaactccaaagctcagaatggttttactccattgtacatggcagcccaggaagggcatgttgatgtggtgagaacacttcttaccaaaggagctaatcagcagtgtactacagaggatggatttactccaatcgatgtcgctgttcaacaaggacatgaaaaagttgtagctgcccttcttcatcatgactccagaaaaggctatcgttctcttcatactgcagccaggaaggattttgccaaagcagctaaacttctgctccagaaagaccacaaacctgatattgaagctccaaatggtttcacaccacttcatattgccgctaagtacgggaaccaaaatgttgcaggagtgctgattcagcacggggctactattgactacaaaactaagaactatgtcattgcaccccttcacgtggcagcaaaatatggcaaccttaatgttgtgacaatactggtagagaaaggttcaaaagtcgacatacccaacaaggatggtctgactcctcttcactgtgcggcaagagatggacatgacaaggttgtggaatatcttgtgaataagaaggcgtcaataacatccagaacaaagcatggtcttactcctctacacatgtcttgccaagggaatcaccacagcacatctggactactgatcgacagcaaagctcctgttaatgctgttgcaacaaatggcctgacacctctccacatcgctgcacattacggtcacgtggatattgctgagcttttgctgaaccgcggagctgacactgatgctagagccaggaatgggtttactcctcttcatgttgcttgtaagaaaaatcgggaacaagtcatccagctgctgttgaaatatggtgcaaatgttcattctgccaatgagggtggccaaactcccatgcacgttgcaacatattatggtaatgtcacattagttcttatccttcttcaacatggcggctctcctgacatcaccaatgtgagaggtgaaactgctttacacattgcatgtcgtagaaggcagataacaattgtgcgactgttgcttaggaatggtgcgtcagtggatgccaaaacacaggaccgtgagactccattgcatattgccgtcagaacaaagaatgtggagatggtgaatcttctgctggatcatggggcatccactgatgctattgataagaacaagtgtacacctttgcatattgctgccagagatggtaatgaagaactggtagaaattcttctggaacacggagcttctgttactgagctgtctaagaaaggatttactcctctacacgaggctgccagaaatggtcatgtcaggattgtggaaatcttgctgaagcattatgataaccctgacccagagggaaagcatggactcactcctcttcatgtggcaactcactacaacaatgataaagtggctacttttctgttggagaacaacgccgatcctaatgctatggcaaagaatggatttactcctctgcacattggagctaagaagaacaggatagacattgtgttaatactactgagacgaggcatggaccctgctgtcgctacacagactggtatcagtcctcttcatctggcagccaaggaaggacacttggaactgtgtgaacacttggtggagaatggagcacatccaggagtcactaccaataatggcttgactccactgcatttgacagcaagagaaaacaggattgatgtggctaaacttctactcaagcacagtgcacccattaatgctgagactgtgagtggcttcacacccttacatatcgcctgtgtgtacggtcattttgaactggccaggttactgatagaagcaggaacagacattgaaggcaagacaaagaacggctacacagctcttcacctggctgcacagtatggacacaggctgattattgatctgctgttagaacatggagctaatcctaacgctatgaccaatgaaggttacactgctctgtacatctcccgaagagtaaatctaaataccacgataacggagactctgtctcaagtaacagttgtcacacagaccattaaaatcaggagaaaaccgggagaggagggagaggaaggagaagaaggcgaagaagacacagaatcggacatagtgttcagtgcagaacctgaagagttggaggaggaggaagttcttgaagctctggaattagttgaagaagatccatcaattgccgaggaatcttatgaccgctttatgacaatggaagacatggtggatgatgaacgaagctcatcaactctaacacacagagactccggtattttcagctcttcacggtactctggagcgttctttgagggaaccccgaccggctcccgagcttccgacttgaaccgctctcgtctgtccgatttcaacgtgtccgagagcataacgacttcggaaatgatcgtgacagagtcggagcttccgtcgagcctggcggacatggccgatgataatgtgccaaaatacgagccgttggtggcgggagatttcttggtgagtttcttggtggacgccaaaggaggcaagatggagagctctcagaccgggctcaagatcacgctgccaccaagatcatgccagatgccgactagaatcatatgtaaacagttacgaatgaacaagccttcgctgatgcccccactatgggagggtgaggcattagcttgtcgtattcttgatgtaaacccttcaagtttaaagttcctgcagccggtctatttggagttaccgcattacgctgcgcttagggacggcgagagagaattggtagtgctacgaactcaggacggaggctggaattggcaggaagtctgtgttgaagacatgaaagctgtggatggttacagctcagacatgaatattcatcaaggctacttcccaagcaagagatacgcacgcattgaaacacaggatttccctgagaagttttccatcatatcacgactaaagaaagaaaccttcactgttggtcctcggggcgaggtcctaaaatcatcggtcctccctcaagtgcaagttaaggtccctgatggggctgtatcgagtggaacaaaaattaccttacaggtccaacctgccgacgaatcattcaatgacttcgaggactgggttgctgtgagccctgtggttacacttgaaccacaggacgttaccttctccaaacctgtgacaattaccatccccaccccagtctacagcccaggtggtgatagtgttgacattcagccatctctgcgactgctcagctgtgagccacgtgacaacagaaagtctatgtcccatgcccccacgtaccagtggcatgacatcactgatactacaccgctgagcgtagtgaacgagtgcgcaactttcacgacaagtcatccggcaagatactggcttgtggaaacacgtaacccagacaacgtgacgacagacgcacgcctgttgtaccgcaagttaaccgctgttcctttcttggtcaaaattgtggtgtttgctaaagtgaaacctgatggaacagaggcccgtctgagagtcttctgtatcacggatgatagcatgaagaaaacgctggaacaacagactggctttgtagaggtggcgaggagtcgtgatgtggaagtgtgcgagggaagaccagtacatgtcaggtgcttaggtaacgtcaccccagttaatcgtgagccattacagatgacgttttctcctttccgcgaaaaccgccttggcgtgactgtgcgcgtgacagacccgtcccagccccccacctgtcggctggcgttcctcaaagaacctcgcaaagaccgccagggtaacgtgcgaacaatctgcaatctgagcatcgatttgtctgaagagaacttgaagaaggaagatgcatccgtccgacttcctgatgatttgttgacgttgatcggcaaaggtgttggttacgactggattgcgcttggtcagcagttgggatttacagactcggaactgcaagaaatctctgacagacattctgcttcaactgacgagtgtgccactgatgtgttgaagacctggcgagacaaggaagactccgaggctgacatggcgtccttagagaaagctctccgtgaaatgggacgagaagacattgcagacaacttcaaacagcttgcctacagaagctactcaaaggaccctgtggttgtcgtggaaacgcaccgcacgactactcacacggtaacaacagagagctctgcaccaggtcaccggcgcatttccgagttcctggacacggcgggtgggacggacgacatgtttggtggagatgacgctggttcccattccccgcgcacggatcgtaaggaccagactgacggcgacgaggttttcacggaggccagaaagagctcacctgaaccaatcacagaagagtctgtcattgtagtagagaaacacagagtcgtggacgaagatggcaatgtcattgaagaaagccacaagattatcgaagatggaagcgaggtttcagaagacagagaaaaattgctgcaagatttcttcggaaacgacaaaggcgtcttagaattcttcaccagcgaagctaacaaggctatagagaatggcgatgaagaaaccgagatataa

Transcript

evm.model.Ap9.81

ATGAAGGACAAGGATAAATCCGCAGCATCATTGAACCAGGTTGATGTGGCATTTTTGAGGGCTGCAAGAGCTGGGAACCTTGAAAAGGTTCGAAACTTTCTAAATGAGGAAGGAGACATTCACACTTGCAATGCTAATGGCCTCAATGCACTTCACCTGTCATCTAAGGAGGGTCATGTTGAGGTCGTACAAGAGCTTTTAAGGCGCGGAGCAGGAGTCAACTTCACCACCAAGAAAGGAAACACAGCACTTCATATTGCATCACTTGCTGGGCAGAAACCGGCAGTGGAGGTTTTATTGGAATCTGGTGCCTCTGTAAACTCCAAAGCTCAGAATGGTTTTACTCCATTGTACATGGCAGCCCAGGAAGGGCATGTTGATGTGGTGAGAACACTTCTTACCAAAGGAGCTAATCAGCAGTGTACTACAGAGGATGGATTTACTCCAATCGATGTCGCTGTTCAACAAGGACATGAAAAAGTTGTAGCTGCCCTTCTTCATCATGACTCCAGAAAAGGCTATCGTTCTCTTCATACTGCAGCCAGGAAGGATTTTGCCAAAGCAGCTAAACTTCTGCTCCAGAAAGACCACAAACCTGATATTGAAGCTCCAAATGGTTTCACACCACTTCATATTGCCGCTAAGTACGGGAACCAAAATGTTGCAGGAGTGCTGATTCAGCACGGGGCTACTATTGACTACAAAACTAAGAACTATGTCATTGCACCCCTTCACGTGGCAGCAAAATATGGCAACCTTAATGTTGTGACAATACTGGTAGAGAAAGGTTCAAAAGTCGACATACCCAACAAGGATGGTCTGACTCCTCTTCACTGTGCGGCAAGAGATGGACATGACAAGGTTGTGGAATATCTTGTGAATAAGAAGGCGTCAATAACATCCAGAACAAAGCATGGTCTTACTCCTCTACACATGTCTTGCCAAGGGAATCACCACAGCACATCTGGACTACTGATCGACAGCAAAGCTCCTGTTAATGCTGTTGCAACAAATGGCCTGACACCTCTCCACATCGCTGCACATTACGGTCACGTGGATATTGCTGAGCTTTTGCTGAACCGCGGAGCTGACACTGATGCTAGAGCCAGGAATGGGTTTACTCCTCTTCATGTTGCTTGTAAGAAAAATCGGGAACAAGTCATCCAGCTGCTGTTGAAATATGGTGCAAATGTTCATTCTGCCAATGAGGGTGGCCAAACTCCCATGCACGTTGCAACATATTATGGTAATGTCACATTAGTTCTTATCCTTCTTCAACATGGCGGCTCTCCTGACATCACCAATGTGAGAGGTGAAACTGCTTTACACATTGCATGTCGTAGAAGGCAGATAACAATTGTGCGACTGTTGCTTAGGAATGGTGCGTCAGTGGATGCCAAAACACAGGACCGTGAGACTCCATTGCATATTGCCGTCAGAACAAAGAATGTGGAGATGGTGAATCTTCTGCTGGATCATGGGGCATCCACTGATGCTATTGATAAGAACAAGTGTACACCTTTGCATATTGCTGCCAGAGATGGTAATGAAGAACTGGTAGAAATTCTTCTGGAACACGGAGCTTCTGTTACTGAGCTGTCTAAGAAAGGATTTACTCCTCTACACGAGGCTGCCAGAAATGGTCATGTCAGGATTGTGGAAATCTTGCTGAAGCATTATGATAACCCTGACCCAGAGGGAAAGCATGGACTCACTCCTCTTCATGTGGCAACTCACTACAACAATGATAAAGTGGCTACTTTTCTGTTGGAGAACAACGCCGATCCTAATGCTATGGCAAAGAATGGATTTACTCCTCTGCACATTGGAGCTAAGAAGAACAGGATAGACATTGTGTTAATACTACTGAGACGAGGCATGGACCCTGCTGTCGCTACACAGACTGGTATCAGTCCTCTTCATCTGGCAGCCAAGGAAGGACACTTGGAACTGTGTGAACACTTGGTGGAGAATGGAGCACATCCAGGAGTCACTACCAATAATGGCTTGACTCCACTGCATTTGACAGCAAGAGAAAACAGGATTGATGTGGCTAAACTTCTACTCAAGCACAGTGCACCCATTAATGCTGAGACTGTGAGTGGCTTCACACCCTTACATATCGCCTGTGTGTACGGTCATTTTGAACTGGCCAGGTTACTGATAGAAGCAGGAACAGACATTGAAGGCAAGACAAAGAACGGCTACACAGCTCTTCACCTGGCTGCACAGTATGGACACAGGCTGATTATTGATCTGCTGTTAGAACATGGAGCTAATCCTAACGCTATGACCAATGAAGGTTACACTGCTCTGTACATCTCCCGAAGAGTAAATCTAAATACCACGATAACGGAGACTCTGTCTCAAGTAACAGTTGTCACACAGACCATTAAAATCAGGAGAAAACCGGGAGAGGAGGGAGAGGAAGGAGAAGAAGGCGAAGAAGACACAGAATCGGACATAGTGTTCAGTGCAGAACCTGAAGAGTTGGAGGAGGAGGAAGTTCTTGAAGCTCTGGAATTAGTTGAAGAAGATCCATCAATTGCCGAGGAATCTTATGACCGCTTTATGACAATGGAAGACATGGTGGATGATGAACGAAGCTCATCAACTCTAACACACAGAGACTCCGGTATTTTCAGCTCTTCACGGTACTCTGGAGCGTTCTTTGAGGGAACCCCGACCGGCTCCCGAGCTTCCGACTTGAACCGCTCTCGTCTGTCCGATTTCAACGTGTCCGAGAGCATAACGACTTCGGAAATGATCGTGACAGAGTCGGAGCTTCCGTCGAGCCTGGCGGACATGGCCGATGATAATGTGCCAAAATACGAGCCGTTGGTGGCGGGAGATTTCTTGGTGAGTTTCTTGGTGGACGCCAAAGGAGGCAAGATGGAGAGCTCTCAGACCGGGCTCAAGATCACGCTGCCACCAAGATCATGCCAGATGCCGACTAGAATCATATGTAAACAGTTACGAATGAACAAGCCTTCGCTGATGCCCCCACTATGGGAGGGTGAGGCATTAGCTTGTCGTATTCTTGATGTAAACCCTTCAAGTTTAAAGTTCCTGCAGCCGGTCTATTTGGAGTTACCGCATTACGCTGCGCTTAGGGACGGCGAGAGAGAATTGGTAGTGCTACGAACTCAGGACGGAGGCTGGAATTGGCAGGAAGTCTGTGTTGAAGACATGAAAGCTGTGGATGGTTACAGCTCAGACATGAATATTCATCAAGGCTACTTCCCAAGCAAGAGATACGCACGCATTGAAACACAGGATTTCCCTGAGAAGTTTTCCATCATATCACGACTAAAGAAAGAAACCTTCACTGTTGGTCCTCGGGGCGAGGTCCTAAAATCATCGGTCCTCCCTCAAGTGCAAGTTAAGGTCCCTGATGGGGCTGTATCGAGTGGAACAAAAATTACCTTACAGGTCCAACCTGCCGACGAATCATTCAATGACTTCGAGGACTGGGTTGCTGTGAGCCCTGTGGTTACACTTGAACCACAGGACGTTACCTTCTCCAAACCTGTGACAATTACCATCCCCACCCCAGTCTACAGCCCAGGTGGTGATAGTGTTGACATTCAGCCATCTCTGCGACTGCTCAGCTGTGAGCCACGTGACAACAGAAAGTCTATGTCCCATGCCCCCACGTACCAGTGGCATGACATCACTGATACTACACCGCTGAGCGTAGTGAACGAGTGCGCAACTTTCACGACAAGTCATCCGGCAAGATACTGGCTTGTGGAAACACGTAACCCAGACAACGTGACGACAGACGCACGCCTGTTGTACCGCAAGTTAACCGCTGTTCCTTTCTTGGTCAAAATTGTGGTGTTTGCTAAAGTGAAACCTGATGGAACAGAGGCCCGTCTGAGAGTCTTCTGTATCACGGATGATAGCATGAAGAAAACGCTGGAACAACAGACTGGCTTTGTAGAGGTGGCGAGGAGTCGTGATGTGGAAGTGTGCGAGGGAAGACCAGTACATGTCAGGTGCTTAGGTAACGTCACCCCAGTTAATCGTGAGCCATTACAGATGACGTTTTCTCCTTTCCGCGAAAACCGCCTTGGCGTGACTGTGCGCGTGACAGACCCGTCCCAGCCCCCCACCTGTCGGCTGGCGTTCCTCAAAGAACCTCGCAAAGACCGCCAGGGTAACGTGCGAACAATCTGCAATCTGAGCATCGATTTGTCTGAAGAGAACTTGAAGAAGGAAGATGCATCCGTCCGACTTCCTGATGATTTGTTGACGTTGATCGGCAAAGGTGTTGGTTACGACTGGATTGCGCTTGGTCAGCAGTTGGGATTTACAGACTCGGAACTGCAAGAAATCTCTGACAGACATTCTGCTTCAACTGACGAGTGTGCCACTGATGTGTTGAAGACCTGGCGAGACAAGGAAGACTCCGAGGCTGACATGGCGTCCTTAGAGAAAGCTCTCCGTGAAATGGGACGAGAAGACATTGCAGACAACTTCAAACAGCTTGCCTACAGAAGCTACTCAAAGGACCCTGTGGTTGTCGTGGAAACGCACCGCACGACTACTCACACGGTAACAACAGAGAGCTCTGCACCAGGTCACCGGCGCATTTCCGAGTTCCTGGACACGGCGGGTGGGACGGACGACATGTTTGGTGGAGATGACGCTGGTTCCCATTCCCCGCGCACGGATCGTAAGGACCAGACTGACGGCGACGAGGTTTTCACGGAGGCCAGAAAGAGCTCACCTGAACCAATCACAGAAGAGTCTGTCATTGTAGTAGAGAAACACAGAGTCGTGGACGAAGATGGCAATGTCATTGAAGAAAGCCACAAGATTATCGAAGATGGAAGCGAGGTTTCAGAAGACAGAGAAAAATTGCTGCAAGATTTCTTCGGAAACGACAAAGGCGTCTTAGAATTCTTCACCAGCGAAGCTAACAAGGCTATAGAGAATGGCGATGAAGAAACCGAGATATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C8R3	Ankyrin-2 OS=Mus musculus OX=10090 GN=Ank2 PE=1 SV=2
G5E8K5	Ankyrin-3 OS=Mus musculus OX=10090 GN=Ank3 PE=1 SV=1
Q01484	Ankyrin-2 OS=Homo sapiens OX=9606 GN=ANK2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002932 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17809 all species →	UPA_2	UPA domain	Domain	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR040745 all species →	Domain	Ankyrin, UPA domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR051165 all species →	Family	Multifunctional Ankyrin Repeat Domain-Containing Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24123 all species →	ANKYRIN REPEAT-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09255	ANK2, ANKB; ankyrin-2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.