Gene detail

Detailed information of evm.model.Ap9.836 in Astrangia poculata

Genomic Location: Ap9:9106842...9144799
NR annotation: XP_020622997.1, uncharacterized protein LOC110060551 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.836

atggttgatcttatatccatccgcatagtttcttacaaatattattttgtatggggtgttgagagaggaaaactcaatattcaacaggtgggagctgacggttttcactgtgaacctgtgtcattcagcagtggtttttccagtggaactcctgtgagagtatttgcttccattaatcatggaaacgaatcatcaggagcccatgattccgcttttgtttgggtggaagatgtgacaactaaccgctttaaggcctgtctcgtgcaagttggttggggctacggaggtaacaccaccatcgactggtttgcattccaaggttcccaaatgggcgtttatcacggagaggctagttttagccttttcacgactggaacaaaatgcagtcaggtttcatttcctcaggccttttcattggtgccaaaagttctcttgactgtaaaacacggtaccccaaaccaaaagcaggacgccatgagtgtctggatagaaagcgtttccaaaagtcagtttgaagtttgtttacgggaggcgaggacatttgatggacctcacaacaatcttgcagtgagctggatggcatatgaacagtacccatcaccatgggaagctaaagagtcatcatcggtggtgttttctgacaacgaggtaccaactgcagaaaccaactactccctttgcaagatggtaaacttcacacaaccattttatacaccgccagtgatactcacaactgctcttaatggtggaagcaacaatgccaacatagcgtgtgcagtgaaaggtcctttgagcagttggctggaggaagtgaccaactcccactttcgagtgtgcatcaaggattacgcaggatacaatggtcagagaagcaatgtaattgtgaactatttagtcatcggagacctcgatccctgtagaaattcaagctgcaagtaccacagttactgtgtagcctcgtctccgcaccagtttacttgtgtttgtgaaagcagctgtccatcatacgaagaacaagtctgtgcttccaacggacgtacattcactaacatatgcttgcttaagaaagaaatctgcagaacacgtggaaattataccaactatcatcctggaagttgtacaggttttccacttcagaaaggtagacacaaattcaagaacgtaccctcatgggcagaagatcagtgtgaagtcgtcaagtttgaaccgtacacattctaccctcataagaaaatatacatacagcttactgtaaaccacttaaattactctgatcctacctacgtacatgaggccactacaccgtgggttgaaagcgttaacagcagtcagtttacggcctgtgttactcgagctggaaggaatgactatccttcagatagcttcgccacaattgattgggtcgcctatcaaggtgccccacctggaggagtagcaggcgaagaagcattttccagatggtggactgggactaactgtcaaacggtcactcttccaaatgggaaattttctaactcaccgacgatattcgccacggctaaacatcacagatcaagtctcaaacacgatgctaccagtgtgtggctggaagatgtatcagcaagttcctttaagatttgtctcagggagcttcaaaactttgcgggagttcatgacgacatctcagtgaactggttggcgttcgagtcccttcatagaccactgtttaaagagcatggagatgtcagctttcaaaatagcatgttgccttcgaagaaccataacttcgccttctgccaggatgtgaatttcattcgaagctacagcaaattccccatagtgatattaacagccaagcattcttccggtggtggaaatgcagctgcagagtgtaacgggatcgtgagctggatagagtttatcaccaactccggatttcgaatttgtgtcaaagaattatatgtccaacgctttgatccactgactgtctcatatgcaatattatcagacatttgccttgacgactggtcgtattttgaaggatattgctacagaaaggtgctttcgtgcaatacttggagcaacagccagggaacatgtgctactctaggagctaatcttcccagtgtccacaatcaagaagaaaatgtctatatccaaagtttacacggtggagaatactcttggttgggcctctctgatatcaactcagaaggaacattcgtgtggagcgacggaacaccgcttgacttccattactgggcgaaaaaccaaccaaatgattttcacaacgaggattgtgttcatacccttggcttacttaacgatcacaaatataaatggaacgatgtcaactgcacagtttgtcacaaatttacttgtaagaaagattacgacgaatgccaggacttctcctacgattgcccagtgaactccacttgtgtgaacactgatggttcttactcatgtaaatgtcctgttggatatcgtctagatggaaagaactgcacagatgttgatgagtgtcatttggggttattctcctgtcatgccaacggtcagtgtgtgaatgttcctggttcctacacctgcagatgtttgccaggctatgcaggggacggaaaacaaagctgcgctgcacctgtggtgacggttacgagttcttgcggttccaatttagtgttgagtgacaccaacgcgaaaggaatcattctttcaagtacctcgacttatggctctaatttggattgccaatgggatatatcttcaaatgcaattctagaacttgctttttttaccttcgacaccgaagcatctgcagacttcgttgatgtgtacgatggaggatccacgtcttcccccctttttggacgatttagtggatcttctcttccagcactcattgaaagctcttccaacaatctttatgtgaggtttacatccgatggttcagacggaagcaacgagggatttacagctacttaccgagctgtgacagatggaactcttcgcttatacggcaattcgccatcagctggacgagttgaaatattctatgctggtcaatggggctcgatttgtgacgatgcctgggatattaatgatgctaacgtggtgtgcaggcagcttggctttgaaaaagcttcacaagcttacggcggcgccactcatggtcagggatccggtccgatatggatggatgacttggcatgctcgggaagcgagtcgcatatttacgactgcagacaccgtggatggggaaaacatgattgcacccatagccgagacgccagcgtggaatgtacatccattcgcttagcaaatggcggggctaactatggtcgcgtggaagtttgcctaaacgggatctggggcacaatttgcgatgatcactgggatagcaatgatgctaatgtggcatgccgacagtttggctactcaggtgtgtcttcccaatctggtggtgcagcatacggccagggtactggtcctatctttttggatcatgtacaatgccaaggatcagagacatcacttgaagactgtcctcatctcgggtggggaaaacatcactgtggccaccacgaggattcaagtgtggtttgttattaa

Transcript

evm.model.Ap9.836

ATGGTTGATCTTATATCCATCCGCATAGTTTCTTACAAATATTATTTTGTATGGGGTGTTGAGAGAGGAAAACTCAATATTCAACAGGTGGGAGCTGACGGTTTTCACTGTGAACCTGTGTCATTCAGCAGTGGTTTTTCCAGTGGAACTCCTGTGAGAGTATTTGCTTCCATTAATCATGGAAACGAATCATCAGGAGCCCATGATTCCGCTTTTGTTTGGGTGGAAGATGTGACAACTAACCGCTTTAAGGCCTGTCTCGTGCAAGTTGGTTGGGGCTACGGAGGTAACACCACCATCGACTGGTTTGCATTCCAAGGTTCCCAAATGGGCGTTTATCACGGAGAGGCTAGTTTTAGCCTTTTCACGACTGGAACAAAATGCAGTCAGGTTTCATTTCCTCAGGCCTTTTCATTGGTGCCAAAAGTTCTCTTGACTGTAAAACACGGTACCCCAAACCAAAAGCAGGACGCCATGAGTGTCTGGATAGAAAGCGTTTCCAAAAGTCAGTTTGAAGTTTGTTTACGGGAGGCGAGGACATTTGATGGACCTCACAACAATCTTGCAGTGAGCTGGATGGCATATGAACAGTACCCATCACCATGGGAAGCTAAAGAGTCATCATCGGTGGTGTTTTCTGACAACGAGGTACCAACTGCAGAAACCAACTACTCCCTTTGCAAGATGGTAAACTTCACACAACCATTTTATACACCGCCAGTGATACTCACAACTGCTCTTAATGGTGGAAGCAACAATGCCAACATAGCGTGTGCAGTGAAAGGTCCTTTGAGCAGTTGGCTGGAGGAAGTGACCAACTCCCACTTTCGAGTGTGCATCAAGGATTACGCAGGATACAATGGTCAGAGAAGCAATGTAATTGTGAACTATTTAGTCATCGGAGACCTCGATCCCTGTAGAAATTCAAGCTGCAAGTACCACAGTTACTGTGTAGCCTCGTCTCCGCACCAGTTTACTTGTGTTTGTGAAAGCAGCTGTCCATCATACGAAGAACAAGTCTGTGCTTCCAACGGACGTACATTCACTAACATATGCTTGCTTAAGAAAGAAATCTGCAGAACACGTGGAAATTATACCAACTATCATCCTGGAAGTTGTACAGGTTTTCCACTTCAGAAAGGTAGACACAAATTCAAGAACGTACCCTCATGGGCAGAAGATCAGTGTGAAGTCGTCAAGTTTGAACCGTACACATTCTACCCTCATAAGAAAATATACATACAGCTTACTGTAAACCACTTAAATTACTCTGATCCTACCTACGTACATGAGGCCACTACACCGTGGGTTGAAAGCGTTAACAGCAGTCAGTTTACGGCCTGTGTTACTCGAGCTGGAAGGAATGACTATCCTTCAGATAGCTTCGCCACAATTGATTGGGTCGCCTATCAAGGTGCCCCACCTGGAGGAGTAGCAGGCGAAGAAGCATTTTCCAGATGGTGGACTGGGACTAACTGTCAAACGGTCACTCTTCCAAATGGGAAATTTTCTAACTCACCGACGATATTCGCCACGGCTAAACATCACAGATCAAGTCTCAAACACGATGCTACCAGTGTGTGGCTGGAAGATGTATCAGCAAGTTCCTTTAAGATTTGTCTCAGGGAGCTTCAAAACTTTGCGGGAGTTCATGACGACATCTCAGTGAACTGGTTGGCGTTCGAGTCCCTTCATAGACCACTGTTTAAAGAGCATGGAGATGTCAGCTTTCAAAATAGCATGTTGCCTTCGAAGAACCATAACTTCGCCTTCTGCCAGGATGTGAATTTCATTCGAAGCTACAGCAAATTCCCCATAGTGATATTAACAGCCAAGCATTCTTCCGGTGGTGGAAATGCAGCTGCAGAGTGTAACGGGATCGTGAGCTGGATAGAGTTTATCACCAACTCCGGATTTCGAATTTGTGTCAAAGAATTATATGTCCAACGCTTTGATCCACTGACTGTCTCATATGCAATATTATCAGACATTTGCCTTGACGACTGGTCGTATTTTGAAGGATATTGCTACAGAAAGGTGCTTTCGTGCAATACTTGGAGCAACAGCCAGGGAACATGTGCTACTCTAGGAGCTAATCTTCCCAGTGTCCACAATCAAGAAGAAAATGTCTATATCCAAAGTTTACACGGTGGAGAATACTCTTGGTTGGGCCTCTCTGATATCAACTCAGAAGGAACATTCGTGTGGAGCGACGGAACACCGCTTGACTTCCATTACTGGGCGAAAAACCAACCAAATGATTTTCACAACGAGGATTGTGTTCATACCCTTGGCTTACTTAACGATCACAAATATAAATGGAACGATGTCAACTGCACAGTTTGTCACAAATTTACTTGTAAGAAAGATTACGACGAATGCCAGGACTTCTCCTACGATTGCCCAGTGAACTCCACTTGTGTGAACACTGATGGTTCTTACTCATGTAAATGTCCTGTTGGATATCGTCTAGATGGAAAGAACTGCACAGATGTTGATGAGTGTCATTTGGGGTTATTCTCCTGTCATGCCAACGGTCAGTGTGTGAATGTTCCTGGTTCCTACACCTGCAGATGTTTGCCAGGCTATGCAGGGGACGGAAAACAAAGCTGCGCTGCACCTGTGGTGACGGTTACGAGTTCTTGCGGTTCCAATTTAGTGTTGAGTGACACCAACGCGAAAGGAATCATTCTTTCAAGTACCTCGACTTATGGCTCTAATTTGGATTGCCAATGGGATATATCTTCAAATGCAATTCTAGAACTTGCTTTTTTTACCTTCGACACCGAAGCATCTGCAGACTTCGTTGATGTGTACGATGGAGGATCCACGTCTTCCCCCCTTTTTGGACGATTTAGTGGATCTTCTCTTCCAGCACTCATTGAAAGCTCTTCCAACAATCTTTATGTGAGGTTTACATCCGATGGTTCAGACGGAAGCAACGAGGGATTTACAGCTACTTACCGAGCTGTGACAGATGGAACTCTTCGCTTATACGGCAATTCGCCATCAGCTGGACGAGTTGAAATATTCTATGCTGGTCAATGGGGCTCGATTTGTGACGATGCCTGGGATATTAATGATGCTAACGTGGTGTGCAGGCAGCTTGGCTTTGAAAAAGCTTCACAAGCTTACGGCGGCGCCACTCATGGTCAGGGATCCGGTCCGATATGGATGGATGACTTGGCATGCTCGGGAAGCGAGTCGCATATTTACGACTGCAGACACCGTGGATGGGGAAAACATGATTGCACCCATAGCCGAGACGCCAGCGTGGAATGTACATCCATTCGCTTAGCAAATGGCGGGGCTAACTATGGTCGCGTGGAAGTTTGCCTAAACGGGATCTGGGGCACAATTTGCGATGATCACTGGGATAGCAATGATGCTAATGTGGCATGCCGACAGTTTGGCTACTCAGGTGTGTCTTCCCAATCTGGTGGTGCAGCATACGGCCAGGGTACTGGTCCTATCTTTTTGGATCATGTACAATGCCAAGGATCAGAGACATCACTTGAAGACTGTCCTCATCTCGGGTGGGGAAAACATCACTGTGGCCACCACGAGGATTCAAGTGTGGTTTGTTATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UGM3	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Homo sapiens OX=9606 GN=DMBT1 PE=1 SV=2
Q4A3R3	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Sus scrofa OX=9823 GN=DMBT1 PE=2 SV=1
Q95218	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Oryctolagus cuniculus OX=9986 GN=Dmbt1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR050686 all species →	Family	SRCR-S1 Scavenger Receptor	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48071 all species →	SRCR DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.836.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.