Detailed information of evm.model.Ap9.996 in Astrangia poculata

Genomic Location: Ap9:10640067...10649726
NR annotation: RMX54001.1, hypothetical protein pdam_00014889 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8K409DNA polymerase beta OS=Mus musculus OX=10090 GN=Polb PE=1 SV=3
P06766DNA polymerase beta OS=Rattus norvegicus OX=10116 GN=Polb PE=1 SV=4
Q27958DNA polymerase beta OS=Bos taurus OX=9913 GN=POLB PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001983 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14792
all species →		DNA_pol_B_palmDNA polymerase beta palm DomainInterproscan
PF14791
all species →		DNA_pol_B_thumbDNA polymerase beta thumb FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043519
all species →		Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR022312
all species →		FamilyDNA polymerase family XInterproscan
IPR002054
all species →		DomainDNA-directed DNA polymerase XInterproscan
IPR028207
all species →		DomainDNA polymerase beta, palm domainInterproscan
IPR029398
all species →		DomainDNA polymerase beta, thumb domainInterproscan
IPR002008
all species →		FamilyDNA polymerase family X, beta-likeInterproscan
IPR019843
all species →		Binding_siteDNA polymerase family X, binding siteInterproscan
IPR037160
all species →		Homologous_superfamilyDNA polymerase, thumb domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11276
all species →		DNA POLYMERASE TYPE-X FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003887
all species →		Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006284
all species →		Biological Processbase-excision repairInterproscan
GO:0006303
all species →		Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0016779
all species →		Molecular Functionnucleotidyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap9.996.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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