Gene detail

Detailed information of evm.model.HiC_scaffold_1.179 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_1:2771531...2775338
NR annotation: XP_022785847.1, RNA pseudouridylate synthase domain-containing protein 4-like [Stylophora pistillata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O66114	Uncharacterized RNA pseudouridine synthase ZMO0505 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=ZMO0505 PE=3 SV=2
Q9LT72	RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g19440 PE=2 SV=1
Q68XB2	Ribosomal large subunit pseudouridine synthase C OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=rluC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005929 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849 all species →	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006145 all species →	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR050188 all species →	Family	RluA Pseudouridine Synthase	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600 all species →	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0000455 all species →	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_1.179.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.