Detailed information of evm.model.HiC_scaffold_1.8 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_1:92737...104397
NR annotation: XP_032233636.1, glycosyltransferase-like domain-containing protein 1 isoform X1 [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q568B7tRNA-queuosine alpha-mannosyltransferase OS=Danio rerio OX=7955 GN=gtdc1 PE=2 SV=2
Q4V7R4tRNA-queuosine alpha-mannosyltransferase OS=Xenopus laevis OX=8355 GN=gtdc1 PE=2 SV=1
Q66K99tRNA-queuosine alpha-mannosyltransferase OS=Xenopus tropicalis OX=8364 GN=gtdc1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003539 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12038
all species →
DUF3524Domain of unknown function (DUF3524)FamilyInterproscan
PF00188
all species →
CAPCysteine-rich secretory protein familyDomainInterproscan
PF00534
all species →
Glycos_transf_1Glycosyl transferases group 1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051862
all species →
FamilyGlycosyltransferase-like domain-containing protein 1Interproscan
IPR022701
all species →
DomaintRNA-queuosine alpha-mannosyltransferase, N-terminalInterproscan
IPR035940
all species →
Homologous_superfamilyCAP superfamilyInterproscan
IPR001283
all species →
FamilyCysteine-rich secretory protein-relatedInterproscan
IPR018244
all species →
Conserved_siteAllergen V5/Tpx-1-related, conserved siteInterproscan
IPR014044
all species →
DomainCAP domainInterproscan
IPR002413
all species →
FamilyVenom allergen 5-likeInterproscan
IPR001296
all species →
DomainGlycosyl transferase, family 1Interproscan
IPR034113
all species →
DomainGolgi-associated plant pathogenesis-related protein 1, SCP domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13615
all species →
GLYCOSYLTRANSFERASE-LIKE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005576
all species →
Cellular Componentextracellular regionInterproscan
GO:0016757
all species →
Molecular Functionglycosyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_1.8.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Chrysaora quinquecirrha tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Chrysaora quinquecirrha, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP