Genomic Location: HiC_scaffold_1:92737...104397
NR annotation: XP_032233636.1, glycosyltransferase-like domain-containing protein 1 isoform X1 [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families
| CDS |
| evm.model.HiC_scaffold_1.8 |
| Transcript |
| evm.model.HiC_scaffold_1.8 |
| Protein |
| evm.model.HiC_scaffold_1.8 |
| UniProt accession | Description |
|---|---|
| Q568B7 | tRNA-queuosine alpha-mannosyltransferase OS=Danio rerio OX=7955 GN=gtdc1 PE=2 SV=2 |
| Q4V7R4 | tRNA-queuosine alpha-mannosyltransferase OS=Xenopus laevis OX=8355 GN=gtdc1 PE=2 SV=1 |
| Q66K99 | tRNA-queuosine alpha-mannosyltransferase OS=Xenopus tropicalis OX=8364 GN=gtdc1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003539 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12038 all species → | DUF3524 | Domain of unknown function (DUF3524) | Family | Interproscan |
| PF00188 all species → | CAP | Cysteine-rich secretory protein family | Domain | Interproscan |
| PF00534 all species → | Glycos_transf_1 | Glycosyl transferases group 1 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051862 all species → | Family | Glycosyltransferase-like domain-containing protein 1 | Interproscan |
| IPR022701 all species → | Domain | tRNA-queuosine alpha-mannosyltransferase, N-terminal | Interproscan |
| IPR035940 all species → | Homologous_superfamily | CAP superfamily | Interproscan |
| IPR001283 all species → | Family | Cysteine-rich secretory protein-related | Interproscan |
| IPR018244 all species → | Conserved_site | Allergen V5/Tpx-1-related, conserved site | Interproscan |
| IPR014044 all species → | Domain | CAP domain | Interproscan |
| IPR002413 all species → | Family | Venom allergen 5-like | Interproscan |
| IPR001296 all species → | Domain | Glycosyl transferase, family 1 | Interproscan |
| IPR034113 all species → | Domain | Golgi-associated plant pathogenesis-related protein 1, SCP domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13615 all species → | GLYCOSYLTRANSFERASE-LIKE 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0016757 all species → | Molecular Function | glycosyltransferase activity | Interproscan |
evm.model.HiC_scaffold_1.8.Genes whose expression across the transcriptome samples of Chrysaora quinquecirrha tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Chrysaora quinquecirrha, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |