Gene detail

Detailed information of evm.model.HiC_scaffold_1.95 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_1:1451967...1486194
NR annotation: CAH3015984.1, unnamed protein product, partial [Porites evermanni]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_1.95

ATGACAGAGGATTTTAATGACGAAAAACTCCCGAAAAGGATAACTTTAAATCCAAAAACTGCAGCAAATGGAGTTGAGGAAGTTTCTAGGAGTTACGAAAATGACGTGGACAACAACTCAACAGTGCCAATATCTTTAGACCAGTTAACAAACAATGATgttgaaattcaaaaacatcagaaaCGAAAATCTAAGAAGAAAGGGATTTTTATATCTTATTCCTTTGAAGCACCTTATGAAGAGAAGAAATTTGTTCTTGAGTTAGTAAAACAACTAGGAGAAATAGGTTTGCAAGATGAGATTTGGTTTGATAAAGATGTTCTAAAAGAAGAGACAAACAGTCCATTTTTCATAAGTCATCGATTAGACACTACTGAGAAATGTAAAGCTGCAATAATTATACTTTCTGAGGCGTATTTTGCCACAAATCAAACAAGATGTGAAGCTGAACTTTTGCTGTCCAGAATATTAGAGACCTCTTATCTCAATGAAACAGCTGATAATATACCTGAGCTTTTTATTGTGAAGTTCAACAAGTGGGGAGACCAACTAGAAAGCATCTATGAACCCTTAGCAAGGTCCATATCAGTTGATCTAAGCTGTGGAAAAATCTCCAGACTTTCAGAGGCAGAAAAAGTTTCCATGTTTATCAAAGTTATGAATAAGAAACTCGAGGAAATAGCAAATGGCTTTTCGATAAAGATTCCGAAAATCTCCGAGGATGTACCTGTTTCTAATCTTTTTAGGAGGAAACCCATGATAAACTGGACTGTTAAAGATGTACAAGACTGGTTATTATTCTTGAAAATTCACGAGAAATATGTTATATCATTTGAGGAGTTTGAAATTGATGGATACCTTCTACACACACTAACTGATGATGTTTTGTCAAACGTTTTAGCTGTTGATAGCCAGATTTGTAGAAGAAAAATACTACAGAGGGTGAAACTCTTATGTGACGAAGAATCAAGGACAGGTGCTCATTGTGAGTGGTTGAAATACAAAAATATCCGGCAAAAAGTCAATCAGGTTTATTTGATACAAGATCCAAGTGATGAAGAGCTAGGCAATATTCTTAAGCTGGATTTGAAAAGAaaaggtgtcaagGTCCTGTCACATAACATTCTTGGCCAGTCTAAAGAAGAATTCCTCAGATCAAATGCCAACAACCTCGCTTCGTCATCACACTGTATTTTACTCCTAACAGAAAAAGCATGCGACTCGCCATTTGTTTTCTACGAAGCCGTACTATCAGAATGGCTGAAAAGGCCCCTAATTGTAGCTGTATTTCAACATTACCCCGACAAGACACGTCTTGCGTTGACTGTTTTGCTGTCCAACAAACCAGCTATCAACTTCGAGACATCGCTATATCTGGATGGCCTAGACTTGCTGTGGGATGAAATCAAGCCTGTCCGAGCCTTATCTGGTGTCGTTTTCGAGCAGAGATACCTCAGGCAAGTTGCTGAAGGAATACGACCGTTCAGCGAAACGATTAAGCAGATAGGGGCGCCACAAGTAATACATAAGCATACAAGACTTGATGCCTATGTTTTTCTTGTCTTCGCTGGTAACAATTACAGACAAGCACAATCACAGAAAGGACGGAAAGTTTTGATATTCTTCTTTTCGATGACCAAGCGAAAGGCCCTGGCGCCCTGGTACCGCTATCTTATTTTTTATCGAAGAAAACGTTTCCCTTctgattggtgtttaaaacacaatctAATCAACATCTTAGAACAAGAATCAAATGTTGCCATAGATTGGTTGGAAAGAAATGACATGATTGCAAATCCCGAAAAATTCCATGCTATACTAATGACCAAACGCAAAGACGATACAAAAGGGGAAAAAATCATGATTCATGAAAAACAAATCGAGTCTGAGAATACACTTGCCTTGGCCTGCCAATACAGAATAGCATTAGACAGTCCAAAGACGAACCTAGGACAACCAGAGGTAATGCTCGGACTTCTGCCTGGAGCAGGAGGAACACAAAGACTACCCAAACTGGTTGGTCTGCCAGACTCTCTCGACATGATGCTGACTGGCAAGAACATAAAGGCTGTCAAAGCAAAAAGGATGGGGCTTGTTGATCAGCTTGTTAAAGAAATTGGTCCTGGACTTGCCGCTCCAGAAATGGGCTCACTCGGTTATCTTGAAAATGCTGCTGTTGCAACTGCAAAgGGGCTAGCTAATGGATCAATAAAAGTTGACAGGACTAAATCGTGGTTAAACATGAAAGGTTTGACTTACAATATGACGTCAGGGGTTTCATTTGTAAGGGATTACGTTTTCAAGAAAGCAAGAGAAACTGTCATGAAGAAGACCGGAGGCCTCTACCCAGCTCCATTGAAAATTATCGATGTTACTAAGGCTGGTGCAGAAAAAGGTCACTCAGTTGGTTATGACGAAGAAGCAAAAGGTTTTGGTGAATTAGTCAAATCTTCAGAAGCAAAGGCTCTAATGGGCATCTTCTTTGGCCAGACTGAGTGCAAGAAAAACAGATTCGGAAACCCAAAGAAACCTGCACAAAACATTGCTGTCCTTGGTGCTGGTTTGATGGGTGCGGGTATTGCAGAGGTTAGTTTACAGAAAGCCGGTCATCATGTCATTTTGAAGGATAATTTCGTCAAGGGTTTAGCCAGAGGACAAgatcaaatttacaaaaaTATTAATACTCGTGTAAAGAAGAAGGCATTGACAAGTTTTGAAAGGGATCGTCTTTTATCAAAAATGAGTCCTCAGCTGGATTATGATAATTTCGGTCAAATGGATATGGTAATAGAAGCAGTATTTGAAGATCTGAATATCAAACACAAAGTTTTACAAGAAGTTGAAAAAGTTATCTCAGAAGATTGTATTTTCGCATCAAACACTTCAGCTTTACCAATCTCAAAGATCGCTGCAGCAAGCAAACGACCTGAAAAGGTGATAGGAATGCACTATTTCTCGCCTGTTGACAAAATGCCTTTGCTTGAGATCATTACAACAGATAAAACATCAAAGGATACTGCTGCATCGGCAGTGCAAGTTGGTTTGAAACAAGGAAAAACAGTAATCGTAGTCAAGGATGGACCTGGATTCTATACTACTCGAATCTTAGAGCCAACTTTAGCTGAAGTCATTGGACTTTTACAGGAAGGAATTTCACCTCAACAAATGGATAAATATTCAAAGAGTTTTGGGTTCCCTGTTGGCGTTGCTAGCCTTGTTGATGAGGTTGGTGTAGATGTAGCTTGTCATGTTGCTGAAGATCTAGAGAAAGCCTTGGGTCCAAGATGTGGGGGATCAGATGTTGGTGTTTTGAAGACAATGGTCGAAAAAGGATTTTTAGGTCGAAAATCTGGCAAAGGATTTTTCTTATACCAAGGAAAGAAAGGCAAGCGAGAGATGAATCCAGATGTTCTACAGATTTTGAAGCAGTTTTCAAGACCGGTTCGCGGAAGCCACGACGTTAATGAAATCCAAATGAGGCTAGCAACCAGGTTTGTCAACGAGGCTGTCATGTGTCTCGAGGATGGAATCTTAGCCAGCCCGGTTGATGGAGATATTGGTGCTGTGTTTGGTCTAGGATTTCCACCATTCCTTGGAGGGCTCAGTGGGGATTACCCCAAGAACTCAGTAACAGCAATGACGCTTGCAAGAACGGCATATAAAACAAAACATCTACTGATTGCGACCATTACGTTCTTAGGACCATTTAGATACGTTGATTCTTTTGGCGCTGCAAACATGACTAGGGTGGGAGGAATACGAGCAGTTGAAAGATCAGCTGATTTTCCAGAACAAGAAGCCATGGATTCAAGGGATTCAAGTTCAACAAGCTCCAGCTATTTTATATTCaacgaagatgaaattaaagaaaagcaGATTTCTCAAGTTGGAGTGTCAGCTTGTGGAGCAACTGCAGCTTTGAATGTTTTGGTTTGCTTCAATATAAAAGTCGAAACTGAAAAAGCGGTGAACGCTGTTAAGACGAGATTAAGAAAACATGTAGCACCATTGCCAGAATACCTTAAATCGAGAAGTAAAGCAGGAACCTCCCACAGGGACATTATGAATGGAATTGATGATTTGACCAAGGGTCACGTACAGGGTAGGTTCTTTGCTTTTTATCCAAAAAGAGACGTTGATTTGCACAAATGGTTATTGAACTGGTTAAAGAAGGGTGCTGTTCCTATAGCGACATTAAATCCACAAAAGGAGCAGCCCCCTCAAGGCTACCGAATTGCAGATGCTTGGCACCATCAGATTATATCTGGGGTGAGTCAAAAGGGGGTGCATTTGTGTAACCCCATTAAAATTATGTCCTTTGATCAAATTGGGAAGGTTTTATGTAGTGAATCTATTTTAAAGATCAGATTGGAGGATGTTTTACTGAGATACGAACCCGGAATGGATTTATCAGATATTTTTGATCCAAGAGATAAAAGGTGGGAGGCAATGAACGTTATTGACCAAATCATCAAACTTCACGAAAAGACCAGTAAACAAATGTCGATTGAAAATGGAGGAGAGTCATTGCTCGAACTATTTGCGACAGAATATGTTTCGATACCAGCAGCGTATGAATCAGGAATAACTCTTTTCATGCAGAAAGATTCTAAACATTTCGAAGAACTTGTGAATTGTGAAGATTTGCCTTTAGTAACTTGCTCCCCTTGCCTTTAA

Transcript

evm.model.HiC_scaffold_1.95

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P40939	Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=HADHA PE=1 SV=2
Q8BMS1	Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus OX=10090 GN=Hadha PE=1 SV=1
Q64428	Trifunctional enzyme subunit alpha, mitochondrial OS=Rattus norvegicus OX=10116 GN=Hadha PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003582 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00725 all species →	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02737 all species →	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF00378 all species →	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR006108 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR050136 all species →	Family	Fatty acid oxidation complex subunit alpha	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR006176 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR001753 all species →	Family	Enoyl-CoA hydratase/isomerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43612 all species →	TRIFUNCTIONAL ENZYME SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0016507 all species →	Cellular Component	mitochondrial fatty acid beta-oxidation multienzyme complex	Interproscan
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_1.95.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.