Gene detail

Detailed information of evm.model.HiC_scaffold_10.191 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_10:2381830...2390152
NR annotation: XP_047144979.1, YTH domain-containing family protein 2 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_10.191

ATGATTGGGATGTCTGCTACTTTCGACCAGcGAGCGAAAGAAAACGGACCAAACGGTGCAGGTCCTGTGAGGAAAGGGGAAGCCAGCAAGGGATACAATTACAATCAAGGAAACATTCAGAATCCAAATCCATTGCCTCAACAACCTGAAGTCAGAACTGCAAACATGCCAGAGACATTTGTTTCCGGTTATTACCCCAACACAAACAGTGGATATCAAATACCATACAATTTTGCACAGCAGCAGCCTGCCTGGTCAACAGGCACAAATGTGAACTCTCAGCCGCAAGGATTTGAGCACAGTGTACCAAATTATGCCTTTGGAGCTCTAGCTCCTGGTGGTGGAACAGAGAGCCAGTTTATGACTCAGGACGCTTTGTTTAATCCATCTAATTCTGGATTCAGTACATTTACTGGACCATACATGAATGGAACTGGAGGATGGTCTTATTTCAACAATCCAAGTTCATTTTTCTTTCCAACTGGGAGCACAGATTTGAACTTGCCATTTGGTACAGCTGAAAACCCCAATGGACCTTTGCAACAAGATCTTTATAAGCCCCCACCCCCTCCGGAGCACGAGAAAGCAAATCCAGAGCCAGGTGAACTTACTGCTTTTGAGAATGGAGATATTCAAGACCAGGAATCTGTTGAAAAGGCTTTGTCTAACTTGACTGTTGCTGGAAACCAGGTTGAAAAGGACATTAACGACCCCAGTATAAGTAGTGCTGTGTCAGTTGTTTCCACTAAAGGAACTAAAACATCTAATACCAGTACACCATCAGGAACTTCTAATGCCCCTGCCAAGCCTGCATCGTGGGCAGCAGTTGCAAGCCAACCTGCCAAACCCAAGCCTCCACAGGCAAAAAACCAGAAGGCACCAGTGCAGCTACCTACCACTTCAAAACCAAATTATTCCCATCAAAATGGAACTTCTGCTAGGAATGCTGGTGGAAAACAGCAGCAAAATGCAAGTAATTCTGGACGATGGAATAGACAAAATGCTAATGGACAGGCTGAGAGCTCGGGAGGAGAATCTGGTATGCCAAAAGACTCTTCTAAATTGTTGCGTGAATTGTGGGCGAAAAATAATTTCAACCCAAAAGATTTGAATCTGGATTTTAAGAATGCAAAGTTCTTTATTATTAAAAGCTACAGTGAGGATGATATATTTCGCTCTATTAAATACAGTATCTGGACAAGTACTGAGCATGGTAACAGGAGATTGAACGAGGCATACAAGGAACAGCAAAAATCTGGAGGAGGTCCAATTTACATGTTGTTTAGCGTGAATGGAAGTGGGCATTTTTGTGGTATTGCTACTATGATGTCCTCCGTTGACATTCATGTTGAAACTGGGGTTTGGGTGCAGGACAAATGGAAGGGTCGATTTGATGTGAAGTGGATTTATGTGAAGGACGTTCCTAATAATACCTTGAGGCACATACGCTTGGAGAACAATGAGAATAAGCCAATTACTAACTCAAGGGACACTCAAGAAGTCCCACCTGAGAAAGGGAAGACGGTTATTAAATTGATGCATTCTTACAAAGCACAGACgtctatttttgatgatttcagTCATTATGAACAGCGTCAAGAAGAAgatgccaaaatcaggAAGGTTTTGTTTGTTACAATAGTTAACTTCTTTGTGAGAATGGTCAAGTGTCTTTCGCATGGAGGTGGAGATGGTAACGACCAAGTTGAAGCCGTGTATTCAGAGGTTTATGGTGCTGGAATGAACATTGATGCCCCTGCAGATGAACAACGCAAACTGAGACAAAGTCAGATTCAGATGATATCACAAAGGATCAATTCAGAATTTGTCTTTAGAAAAGCAAGTAGTATCACAGTAGGAAATCAAGCTGCATCTACAGAAAGGCTCTTCCCTGCAGTGGAGGCAGGAGTGTTCAGttttggTTTCTCTATGGTTTTATCACCGGACGAGAATAAAGCATTAGCTGAAAATGTTCTCAGTTTGATTGTTCGATTTTTCTTGCGAATTTTCAAATCTGTTGACGGGTTTGAAGAGatcaaaacaaatcaagaaaagaTCGCTACCGTTCTTCACATCTTCCTGCCGAATGGACAGCTTCTTTTCATGAACCATCGAGTTGTCAGACAGTTGGAGAAAAATGCAAATCAGATactgaatgaaagaaaataa

Transcript

evm.model.HiC_scaffold_10.191

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5A9	YTH domain-containing family protein 2 OS=Homo sapiens OX=9606 GN=YTHDF2 PE=1 SV=2
Q4R5D9	YTH domain-containing family protein 2 OS=Macaca fascicularis OX=9541 GN=YTHDF2 PE=2 SV=1
Q91YT7	YTH domain-containing family protein 2 OS=Mus musculus OX=10090 GN=Ythdf2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007877 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15001 all species →	AP-5_subunit_s1	AP-5 complex subunit sigma-1	Family	Interproscan
PF04146 all species →	YTH	YT521-B-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029392 all species →	Family	AP-5 complex subunit sigma-1	Interproscan
IPR007275 all species →	Domain	YTH domain	Interproscan
IPR045168 all species →	Family	YTH domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12357 all species →	YTH YT521-B HOMOLOGY DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0030119 all species →	Cellular Component	AP-type membrane coat adaptor complex	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0061157 all species →	Biological Process	mRNA destabilization	Interproscan
GO:1990247 all species →	Molecular Function	N6-methyladenosine-containing RNA reader activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_10.191.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.