Gene detail

Detailed information of evm.model.HiC_scaffold_10.655 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_10:7508007...7518998
NR annotation: XP_047138498.1, uncharacterized protein LOC100204026 isoform X5 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_10.655

ATGTCAATGTCAGAGACTGGCAAGGCTAAATTGGCAGCTTTGCAAGGTTTTATAAAAGGAAAGGTTGAAAAATTCAGTTTACTAAACAATGCAAAGTCTGCAAATGAAGATCAAGGTGCtgtaaaaactgaaaaagaggACATTGTTGATGACGAAGTAAAAGAAATGAAGACtttttggttttcaaaacaAGAAGGAGATGCAAAGCAAGTTGAGGAGTCCTGGCTTCCAGGATTGACGAAAAAGCAAAGAATAATTGGTTTCTTCACATTCTTAATAGCTGGGGTTTTCTGTTTCGCCATGGCTGGTTTATTATTGCCATTTTTAATTcttaaagcaagaaaatttgttcTGCTCTATACTATGGGGAGTTTCTTTACTGTTGGAAGTTTTTCAATCTTATGGGGTCCATTGGCACACATAAAACATCTATGTTCTTATCAACGTATGCCATTCACGTTGGCTTATTTTGGTGCAATGTTTGCAACGTTATATTCAGCACTCGTGCTGAAGAAAACAATTCTAACCCtgatttttgctgtttttcaaattgttgCGCTTGTTTGGTATGTTTTTAGTTATGTTCCTGGTGGGACTACAGACGATGGAGAAACTAATTTCAACGGCGGTCTACCTCAGCTGGTAAACCTTCACGATCATTTAGAAAGAGCAAAACAAGACATCATGTCAAGAATCCCGGACCCTCACTATAATGGACTCGCTGTTATTGATTGGGAACCTTGGAGGCCATTATGGGAAAGAAATTGGAATTCTAAGAAAATCTACAAAATCAAATCGGTTGATTTAGTAAGAAAGCACCATCCTGATTGGTCAATGACGGATCTGGTGTTAGAGGCTAAAGATCAATTCGAGGCTGCAGCGCGCTCAATGTTCGTTGAAACAATCAGATTGGGAAAGAGGCTAAGGCCAAAAGCATTATGGGGTTTTTATGGTTTTCCGGATTGTTTTGGGCAAGAAAAATACGATTTCCAATGTACAGACAAGGTAAAACGAAATAACGACAAAATAGACTGGCTATTTGCAGAAAGCACTGCGTTATTTCCATCGTTATATTTACTAAAAAGCCACTTAGAGAACCCTGATTATGTCAAAGGAAGATTACGAGAAGCATTTCGTGTCACTCTTCGTTTATCACAGCGTCGTGGCAAAGATGTTCTTCCCGTATTTCCATATTTCAGAAGTATTTATATGGATCATCCTTTACAGTTCAATTTTCTTGATCGGAATGATCTTTATAACACTATTGGCGTTGCCTCTGAAATGGGTGCAGCTGGCGTAGTCATTTGGGGCAACAGAAATGATGAAAACACGTCACCTGATGTTTGCCATAGAATCAACACATACATTCAAAGCACTCTTGGACCATCAATTAGTCATATCCGAAGCGAGgtTGAAAAATGTAGCAGAGAAACGTGCTATGGATCCGGTCGCTGTGTTCGCAAGGCCCATCTAAGCAGTGATTTAAAAAGGCTTTATACCTTCAGAAAGGATTTATCGAGAAATTGTGCAGAACCGAAGATTGAAGACCTAAATAAGCGAGTATTAGTCCCAACGAAACAACTTCATGATGGTGCGAAGATAACAGCCAATGATTCCTTCCTCAAGTATTCCGTTACTGGTGGACCTTTATCAAATGAAAACTCCAATAAATTACAAGTTGATCTTCGTGGAAGAGTGAAATCAAGTCAAGACGCTTCTAACAGTTCTAAGAAACTGATGAACCAAAAATCAGAAGTTCCCATACCAGACAAACGATTTCCAGGAAGTTTCATAAACAATCACGTGAAACATTCGAAAATATCTTTACTTCCGCATATGTATGTTCTGATCATCGGTGTGGCGATCGCCGGAGCGTTCTTATTCTCGCTTATTTTCGTCGCCTTGTATTATTATATGAACATGAGTCCAACTGATAAGGCGAAAACGGCGAGGGAtgaagagaaaaacgacaaaaaagaaaaagatgagaatatTGGTACTGGGCCTAAGATTTACAAGGAAACTGAGGAGTCTGATATTGAGGTTGATTTGGATTCGCTCAAGTCTTTCAGTCGATGA

Transcript

evm.model.HiC_scaffold_10.655

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q812F3	Hyaluronidase-5 OS=Mus musculus OX=10090 GN=Hyal5 PE=1 SV=1
Q12794	Hyaluronidase-1 OS=Homo sapiens OX=9606 GN=HYAL1 PE=1 SV=2
Q6RHW4	Hyaluronidase-1 OS=Sus scrofa OX=9823 GN=HYAL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002234 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04178 all species →	Got1	Got1/Sft2-like family	Family	Interproscan
PF01630 all species →	Glyco_hydro_56	Hyaluronidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018155 all species →	Family	Hyaluronidase	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR007305 all species →	Family	Vesicle transport protein, Got1/SFT2-like	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11769 all species →	HYALURONIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004415 all species →	Molecular Function	hyalurononglucosaminidase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030214 all species →	Biological Process	hyaluronan catabolic process	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01197	hya; hyaluronoglucosaminidase	EC:3.2.1.35	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.