Gene detail

Detailed information of evm.model.HiC_scaffold_112.8 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_112:105115...132561
NR annotation: XP_048578449.1, DENN domain-containing protein 5B [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_112.8

ATGTCAAACTATCAGCAACAAAGACTCGCAGATTACTTCGCCGTCTGTGGCCTAGACAAGAAATCAGGACTGGAGCCTGAAAAATTTCATGGAGACGCTGTGTCAGTTTGCCCATTTGAGCAACGTTATAAAGCCAGTGTCTTGTTGCATGTGCCTAAAGAAATCCCAAGCAATGCATTTGATGATATTGGTGTAAAAATGCTATGTTTCCCACGTGGAATATCATTCAAAATCAATGAAAAACCAGACTGTGCATTTCATTCCTTTCTACTTACGAGAGAAGATGGATCTCGTGTGTATGGCTGTGCATTGACATTCTTTGAGAAAGTTCAATGTGAGGAGATTTCTGCTGCCATGTACACGCTGGTGAATATGTACAATGCCGAGCAAGAGGCTTTATGGCAAGCGAAAGAAAAATCACAGTTCAATCCCGAAGGATCTTATATGGGTAGTATTGATCGAAAGTATAAGCATCATGCGACAGTCTCAAGCTATGATCCTTCGCAAGATATCTTATATTGTTCCAAATGCATTTGCCTGATAATGCAAAAGCCATTCATCTCGGCCGCTGAAACTTTCCTGCGAGAACTACTTCAAGTTGGATTCAATGAAATTGACATGGCATTACATACTGAGTCTTACGTATATAACATTCTTTATGAAGTGCCAATGCCACCACCAGGAAGGTCACTGCGATTCAGCTGTGGAGGAGCTAGCATTACAGCGCAACAACCGAACATAGATGAGTTACCACTATTTGATTATTCTATCAAAGAGGTTTTCTTGACATTGGGTATCGAGAATGTCGTAGACCTTTACACATGTCTTCTGTTGGAACATCAGATTCTAATAGTGGGCTCAGATCTCAAAAAGTTCATGATGATATCCGAAGCACTGACAACGTTACTGTTTCCGTTACTTTGGCAACATGTGTATGTCCCCATTCTACCCTCTAATCTCCTTCATTTTCTGGATGCTCCTGTTCCATTCCTGATGGGTGTTTATTGTCAGACAGAGGAAGATCGTGAGAATATGGAAATCCCTTGCGAGGCGTCCCTTTGTCTATACGATATGGATGATAACAGAATAGAGTTACCTGAAGAAATTCCTGAGCTTCCTGGCAGAGAAGATCTTATCAAAGAAATAGCAGATGTTTTATCTAAATTTGGAGTTGATCCTCCAAAGGGTTCGGTTTTTCTCAGGCAAAACAATACACCTAGAAAAGAAGATAGTTATGATGGAAACTCTAGCTACGAAAGTATTAGTTCTGAATTGGAGAGTTCTTACGAAAAGAGGGAGCGTGTTCCACCGAATAGGGCATCTAGTTTTAAGAATCAGAACAGAATCAGGGGCCGCGTTTCAAAGGACGATCGTCCAGTTGTGCGTCGTCACCGCTCTAAATCTTCCTCACCGTCATTACGACGCAAAGATTACAATGATATAAGTTACAAGATGCAGACCCGCAAGCTCACTGTTCTGGATCCCAAAACGTCAAGCAGCAAACAGACTTGTCAGAACGCACACCAGGACAAGAATGAAGACAGCGATGGAGTCAAAGATGGCAGCAAAACTCTACCAAATCCAAGATTAGCCGCAATGATGGCACTCGCCCAGAAAGCGGGGATAGACCCATCGTCTGTGATAATAAAAGATAGGATAAGTAACAATTTGAATGCATCAACCTTCGTAGGTCGTGAGAACTTGTTTATATATGGGGAAAGGGCACAGCAGATCAGTCGCAAGGTCCAACATGAAAATGAACTCAATATTGTCATTCGGGATATTTTTCTAAATCGATTCACACAAATGCTTGTAGAGTATGAGTCTTTTGTAATTATTCCAAGGCAAGACAAAGAACAATGGTTGTCAAACAGAGAGCATATGCAGAACTTTGACAAagcagcttttctttctgaccAATCAACATCGTCCTTACCATTCATGACATTGTTTGTTGAAACTCAAGGATTCGCTACATTGATTGATATGAAAATCCTAGCCTCCTGGGAAGATTCCAATCCGAGGCTGTCATTTTTCGATAAGAAAAGAGACTTGCTGAAAGTGAGGCTAGGGATTATTAGATCCCATATCTACGAAAGGTGCAGCTATTTTCCAAAGTCAATTGAAGCATATGTTAATCGTTCGAATCATATTGATTACACTGCCCAAGCACCACATGTTTTGAAACCAGTTCCACAAAGAGATAAAACGAGAGATTGTTTTCCCAATTTGGTAGTCGATCTTCTTGGTGGTCCTCAAGGATCTTCCAGtaaaaAAGTTGGTAAAGTAAACTGGAAGAAGCGTGACaagaaaatgcagcaacaaGAACACATATTGCTGAACAGGGCTATTAAGGCTACTCAGGAAGGtcagaaaattaaagaaaaattggCCGAGAGAGTAAAGAAATACATGCACGACAGCAGGTTGCTGGTCAGTGATGGCTCAATTGCTGGAGGAGGACAGCAGACATTGCCTGCATTTGCAGACCGGCTGCTGAAGGAATGCAAAATGAAGGTTACATTTATACTAACTAGTAAGCAATCTTCGGATATCATAATTACTTCCGAAAGAAAATCGACATGTGTaaagtggcttaagccaccCAGTTATCAAAACGGAATACACAAAGAACAGCTTAAAAGCCTTAatttaaaagagctgttttgTTTTCATCGATGTAACTTTCTTTTGATGGAGAGGGAGTTGTTGCTCCATAAACGACTGCCAGATGACGACACTGCCAATCCTGTTCATGATCTCCCTGTCAAGTTTGTTGTTGCAATACCGTGCTGCCCAATAATAGTAACCAAACAGATATCAGTACCTCTCAAGATGATCTGTCAATTTGTGACTGTGCAAAACATGGCAGAAATAAAGACTGATACTGGATACGCACGTGCTTGGACAAGaTTGTCTCTTGAACGAAAGATTTTATCAAAGCAACTGaaaatgttattgaaaaatCGTGATTTATTACAAACACGATATAAAGATTACGCATTTATAAGAACTGAAGATGAAATGGAGCAATTTCTTTATCATCTTTTGTCACTAAATGCAGTCGATTTCTATTGCTTTACTTATGGATTTTCAAACACCCAAATGAGCTACAGAGTTGGCATAGTAACAACCAAAACAATCGGCTCACTGACGACTGCGAATTGTTGGCTGCAAATATCTGGAGATTTGGCTGCAACAGACACCATTCCTATACCGAAAAGCGAGAGAGAATTTTCATTCAAGCACTCCAACCTTGGTATACTGAGTACAGCACGAATTGGACATGATAATTCTGGTTTATCACCTGGTTGGTTTGTTGATTACTTGATGGTACATAATGAATCAACTGGTTCGCAGTACAGATTTCCCTGTGATCGTTGGTTGTCTCGTAATCAAGATGATGGTAGCACAGAGAGACTGTTAATAGCTGAGTTGATAAGAGTAGTCCCTGCTGACGATGGTAGAATATCTCGTTCTGCTGAATCATCACCTTGCTCAACGATGACCAGAACAACACCAAGTCATCGTAAGAAGTCAATAACCAACACAAAGAAAGGATTAACGGTTCCTGAAATCCAGGAGTCAGTAGCAGATTCAGTGAATGCACTAGTCAAATACTTTTACAGAGAGAAAGAAACGCAGGAAAGTTTAACATATTTGTTGTGTGGAGAAGGCGGATTTTGCCAGTGTATGCAAGTGGTCTTTGGTTTCGGCTTTAAAAGCTCGAGATTATTTGGAAGGAGTATATTTCTTTGGGATTTTGTAGAAAAAGTCAATTTAGAATTTGCTGCAGAAAAAGATATATCACAGATGCCGTCCAATGAACTGAAAAGGTCTAAAAGATCACTCTGTGCAATCGTGCAAAGAATCAATACATCACCACAGTCAattggaaaaaatgaaaaatttaatgtgTGGCTTTGCCTTGGTTTGAGGGATCATCAGCTCCAAAATTGGCTGCAATTGCTGTCAACAACAAAGGCTGCATCACAAATGTACGATAAAAATTCTTTCATCCTAAATCGAGAGCTTTCAGATTTCATTCTAAATGTACTCGAAGCTTTAATGGATTTTGATATTACACTGGAAACTTCAATAACAAGAGAATTATCAGCAGAGAGGTTACTGCATTCAAGAATGAGATTGACAGTAGTCATAGAGTATAAATATCGATATTCAAATTATACACAGTTGAAAAGCCATCTTGACCTAGATTCCCTGAGATAA

Transcript

evm.model.HiC_scaffold_112.8

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RSQ0	DENN domain-containing protein 5B OS=Mus musculus OX=10090 GN=Dennd5b PE=1 SV=2
Q6ZUT9	DENN domain-containing protein 5B OS=Homo sapiens OX=9606 GN=DENND5B PE=1 SV=2
G3V7Q0	DENN domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Dennd5a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002958 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02759 all species →	RUN	RUN domain	Family	Interproscan
PF03455 all species →	dDENN	dDENN domain	Domain	Interproscan
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan
IPR005112 all species →	Domain	dDENN domain	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR047278 all species →	Family	DENN domain-containing protein 5A/B	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46070 all species →	PINSTRIPE, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_112.8.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.