Detailed information of evm.model.HiC_scaffold_119.49 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_119:630284...636190
NR annotation: EDO48587.1, predicted protein [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2YDE4Proteasome subunit alpha type-6 OS=Bos taurus OX=9913 GN=PSMA6 PE=1 SV=1
P60900Proteasome subunit alpha type-6 OS=Homo sapiens OX=9606 GN=PSMA6 PE=1 SV=1
P60901Proteasome subunit alpha type-6 OS=Rattus norvegicus OX=10116 GN=Psma6 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008272 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10584
all species →		Proteasome_A_NProteasome subunit A N-terminal signatureFamilyInterproscan
PF00227
all species →		ProteasomeProteasome subunitDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000426
all species →		DomainProteasome alpha-subunit, N-terminal domainInterproscan
IPR029055
all species →		Homologous_superfamilyNucleophile aminohydrolases, N-terminalInterproscan
IPR023332
all species →		FamilyProteasome alpha-type subunitInterproscan
IPR001353
all species →		FamilyProteasome, subunit alpha/betaInterproscan
IPR050115
all species →		FamilyProteasome subunit alphaInterproscan
IPR034642
all species →		FamilyProteasome subunit alpha6Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11599
all species →		PROTEASOME SUBUNIT ALPHA/BETAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0019773
all species →		Cellular Componentproteasome core complex, alpha-subunit complexInterproscan
GO:0005839
all species →		Cellular Componentproteasome core complexInterproscan
GO:0051603
all species →		Biological Processproteolysis involved in protein catabolic processInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0010498
all species →		Biological Processproteasomal protein catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02730PSMA6; 20S proteasome subunit alpha 1EC:3.4.25.1
Proteasomeko03051deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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