Detailed information of evm.model.HiC_scaffold_1272.2 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_1272:4092...5080
NR annotation: XP_047137118.1, integrin beta-2 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q27874Integrin beta pat-3 OS=Caenorhabditis elegans OX=6239 GN=pat-3 PE=1 SV=1
O54890Integrin beta-3 OS=Mus musculus OX=10090 GN=Itgb3 PE=1 SV=2
Q8R2H2Integrin beta-3 OS=Rattus norvegicus OX=10116 GN=Itgb3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000809 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08725
all species →		Integrin_b_cytIntegrin beta cytoplasmic domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014836
all species →		DomainIntegrin beta subunit, cytoplasmic domainInterproscan
IPR015812
all species →		FamilyIntegrin beta subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10082
all species →		INTEGRIN BETA SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005178
all species →		Molecular Functionintegrin bindingInterproscan
GO:0005925
all species →		Cellular Componentfocal adhesionInterproscan
GO:0007160
all species →		Biological Processcell-matrix adhesionInterproscan
GO:0007229
all species →		Biological Processintegrin-mediated signaling pathwayInterproscan
GO:0008305
all species →		Cellular Componentintegrin complexInterproscan
GO:0009986
all species →		Cellular Componentcell surfaceInterproscan
GO:0016477
all species →		Biological Processcell migrationInterproscan
GO:0033627
all species →		Biological Processcell adhesion mediated by integrinInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_1272.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP