Gene detail

Detailed information of evm.model.HiC_scaffold_13.430 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_13:4707763...4715043
NR annotation: XP_006812779.1, PREDICTED: carboxypeptidase D-like [Saccoglossus kowalevskii]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_13.430

ATGGTGCATCACAACTACGATGCAATGATGAATTTCATGAGAGAATGGCAGCAGAAATGCTCCCGGATATCCAACATGTACACAATAGGAAAGTCAGTTGAAGGTAGGGAACTCTGGGTTTACGAAATTAGTGACAATCCCGGAGTGCATGAACCGGGAGAGCCGGAATTCAAATACATTGGTAATATGCACGGTAACGAAGCAGTTGGAAGAGAAATGTTGCTGCAGTTGATAGTATTATTTTGTACGGAATATGAGCATAATCAAAGACTAAAGTTCCTTGTTGATAATACCCGGATACATTTGATGCCGAGCATGAATCCGGACGGTTATGAACTTTCTGTGAGAGAAGGAAAAGGAGACTGGTTAATTGGAAGGAACAATGCAAATGGCGTTGATTTGAACAGAAATTTCCCGGATCAGTTCAAGTATGCTCAAAATGCTGCAACACAACCGGAAACCATGGCGATTGAGCAATGGATACAGACAACACAGTTTGTTTTGGCAGCTAACCTACATGGGGGCTCACTGGTTGCAAATTACCCTTTTGATGACAGCCCCTTGGGGGATAATTCTTATTCACGTTCACCCGATGATGACGTATTCCGTTCTTTGGCAACAACATACGCAAATGCTCACCCCACAATGCATATGGACGACGCACCTTGGGAATGCCCCGAAATCCCAGCAGATCATTTCAGAGGGGGCATAACGAATGGGGCCAATTGGTATAACGTTGCTGGGGGCATGCAGGATTACGATTATCTTCACTCAAATTGTATGGAAATAACAATAGAGATGGGATGTAAGAAGTTCCCAGATGCAAAAGATTTACCCAGATACTTGAGAGAGAATAAAGAACCAATGTTAAGACTTCTAGAGCAGAGTTACAATGCAAAACCAGTGGCTAGAACAACGACTGGGAGCAATTACCGACACTTGAAGCATCATAATTATCAGCAAATGACAACATTACTGAGGCAACTTGCACAAGAATACCATAATATTGCAAGACTTTACAGTATAGGACAGTCTGTCGATAAGCGAGAACTTTGGGTCATGGAAATTAGTGATAATCCGGGAAAGCATGAACCTGGTGAGCCGGAGTTCAAATATATTGCAAATATGCATGGAAACGAGGTTGCCGGTAGGGAATTATTACTAGAGTTGATTAAAGAACTTTGTAGCGGATATGGGAAGAATAAACGTTATACAGCTTTGATAAAAAACACACGGATGCATTTTATGCCTAGTATGAATCCGGATGGATACGAAAAAGCAGCGGAAAACCCCACAGACTGGCTACAAGGCCGCAGCAATGCACACCATGTAGATCTGAACCGGAACTTTCCGGATCAGTATTTTCCACAGGATATTGGACCGATGCAGCCGGAGACGAAAGCGGTTACAGAGTGGGTGAAGAATAACATTTTCGTTTTGTCAGCGAATCTTCACGGGGGGTCACTTGTAGCAAATTATCCTTACGATGATAATCCATCTGGTAAAAATGAATACACAAAAAgtcctgatgatgatgttttcaaatatttagcATTGACATACTCAAATGCACACAAAACAATGCATCTCGATAACCCACCATGGGATTGTCCAGGAGTGCCTGTGGATCACTTTAATCACGGGGTCACAAATGGTGCAAAATGGTACAACGTAGCTGGAGGCATGCAGGATTACAATTACTTGCATTCAAATTGCATGGAAATCACGTTAGAATTAGGATGTGATAAATTTCCCAAGGAAGAAAAACTTGGAAGATACTGGGATGAGAATCAAGAAGCTTTGGTCAAATTTATTGAGCAGACACACAAAGGTGTAAAAGGATTTGTATTTGACCAAAACAACAAACCAATAGACAAATCAAGCATCACAGTAACAGACAGAGGGCATCCTGTAAACACCGGAGCTGATGGAGATTATTGGAGAATTCTTCTACCTGGTGATTACGAGGTTCGTGCATCAAAAGAAGGCTATGAGCCAATCAGCAAAAGAGTTACAGTAACTGATGGTCCTGCAACTGTTCTCAATTTCACTTTGAGGCAGTCTGGAAGCGAGGCAGGTAATGGAAGAGAGgtagaacaacaacagcaaacagcAAATCAACAAGATACAGCCAGTCAAGCATTACTTCAGAATAAATTGAAGAATTTACTTCAAAACAGCGATCCAGCACTGCCTCTATTGGCTCCCATCAACCAAGACGAAACTCAGCTGATGGGAACAAATGTAAATTACGGTGATTTGAACCAAGCCACATTTGGGTTCAATAGCATCAGTGCCCCTTCTGAATATGGTATAAGTGATTCTGATATTACGCAGATTCAACATCAAGTTAACCCAGAAAAAGGTCTTCTTGATCACATAGCAATGGAATCACCATTCGAGCAATTGTCTGGTCCACAGAAGACTACTTTCTATGATGACAACCAACATGAGTTTGACGAATTTGGCGCAAATAGGAATAACTTTTTTGAGAGGAAATTTGACTCTGATAGTGATGAAGCGCACTAA

Transcript

evm.model.HiC_scaffold_13.430

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JHW1	Carboxypeptidase D OS=Rattus norvegicus OX=10116 GN=Cpd PE=1 SV=2
O89001	Carboxypeptidase D OS=Mus musculus OX=10090 GN=Cpd PE=1 SV=2
O75976	Carboxypeptidase D OS=Homo sapiens OX=9606 GN=CPD PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000771 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00246 all species →	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan
PF13620 all species →	CarboxypepD_reg	Carboxypeptidase regulatory-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000834 all species →	Domain	Peptidase M14, carboxypeptidase A	Interproscan
IPR050753 all species →	Family	Peptidase M14 domain-containing protein	Interproscan
IPR008969 all species →	Homologous_superfamily	Carboxypeptidase-like, regulatory domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11532 all species →	PROTEASE M14 CARBOXYPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004181 all species →	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006518 all species →	Biological Process	peptide metabolic process	Interproscan
GO:0016485 all species →	Biological Process	protein processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01294	CPE; carboxypeptidase E	EC:3.4.17.10	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.