Detailed information of evm.model.HiC_scaffold_132.2 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_132:22512...37515
NR annotation: CAB4037294.1, Furin [Paramuricea clavata]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1JQA8LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Bos taurus OX=9913 GN=LYSMD2 PE=2 SV=1
Q5PQ30LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=lysmd1 PE=2 SV=1
Q6DEF4LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Danio rerio OX=7955 GN=lysmd2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0018115 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01476
all species →		LysMLysM domainDomainInterproscan
PF13472
all species →		Lipase_GDSL_2GDSL-like Lipase/Acylhydrolase familyDomainInterproscan
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018392
all species →		DomainLysM domainInterproscan
IPR036779
all species →		Homologous_superfamilyLysM domain superfamilyInterproscan
IPR013830
all species →		DomainSGNH hydrolase-type esterase domainInterproscan
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan
IPR045030
all species →		FamilyLysM and putative peptidoglycan-binding domain-containing protein 1-4Interproscan
IPR036514
all species →		Homologous_superfamilySGNH hydrolase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20932
all species →		LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.HiC_scaffold_132.2. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_132.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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