Gene detail

Detailed information of evm.model.HiC_scaffold_137.18 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_137:254494...262926
NR annotation: XP_047144154.1, heparan sulfate 2-O-sulfotransferase hst-2 isoform X2 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_137.18

ATGCAGCCCAAATTAGACGGAAAACGGGACCGTGAATTAGCTATAAAGAATGTGCAAATAGTCAAAATGTTGCTACGAATAACCGTTAAGAAGAAGATCTTCACATGTTTGGTTGTATTTATCATTATGATGCTGACTGTTTACCAGTACTGCGAGAACAACCCAGAAAAATGCATTTACCAAGGCAGGGAGATACCTCATATATCACTTACAATAACACACCTTAATGCAAATCAAAGTAAACTCTCTGCCCATGAAAGATGGTTACCAACTGAAAGGGCAACCACTCCAATAATTGACACATTGAAGGATCTTCTTGAACAAGACAACCGAACCCATGCAAGATCAGACATTATTTCAGAAAACAAACAATTGTACCGTATAGAGAGAGTGGATTTCGATGAAGTTataaaggaagaagaagagagagAGGAATCGAAGAAGGGCAACGAGCCCTTACAAGAGGATGGAATAAATTTTTCGTTAAAAGAGCTTGATGAAAAGAtgtatcaaaatgaaacaaagagcCTGACGCATGGCAAAAAAACGCAGCTTCCCGCCATAACAAATTTGTATCGTGAGCCTACAGTAGGCCGCTTTGAAAGAGTCGATAAGACGATTCTAGACCCAGGCTCCATGAGTAAGAAGGACCTGAATGAATATTTCAATAGGACTATCAATAGCAGTTCTGTGTTCATGTACAGTTTACTTGGCCTGAATTCATCTAAGACTGTTGGCTTGAAGAATACTGAAATGGCTAATACGCAGAATGTAGAGAATATAACTGAAATGCTTcctaaaaatctgaaaaatgttAAATATAGAAAATTAGGCCCAGGGAAATTGGATGACAAGTCTCTTCCGTTGGTTTCGAATGTGAAAGAGGCTGGTAAGCGTGAAGATGAGGTTGCGTACGATGATGCAAAGCCGAGAGGAATTGTAAAGCGAAATGAAACAGTGTTTGCAAATAATACTGCAAGCAATCAGGAAGGCATTGAAATATTGTCAAATGCATCTAAAAGAAGCAAAACACCTAATAACGTTCACTCTGATGAATATAAAGGGAATGCTTCTAAAGCTGAAAAGAATACTATTAATGCTACTACATCTAGAAAGGTGAACGAAAAGGATGCAGACGCAGGGTTGACAGGAGTGACTAGGAACGATGTTTTGCCAGTACATGAAGATTTTGATAGTATTTCAGGGGGCTACCTTAAATTCACAAACTCAAAAGATATTGAGAGCGATAGTGACAGCAATGAAGTGGATATTATGAGCGAAACGGATGGCGCAAGTGAAATTAACGCTAGTGACATTGGCGATAGGACTGGCATAGATGGCACGAGTTCTACAAATAGCACATCTGAGGCGAATTTCACCAATGAGAACGAAATTCAAAAAGAGCTTAGGCAGGTCGATTCATATGAGGAATCTGGATTCGGAAACGATTCAAAGGCGGAGTTAATCGAGACTAAGCGCCAAACCGACGACAACTTTGATGAAGAGGTAACTAGCGATCAACAAGTCGCTGGATACGATACGGGAGATCCAGCTACTGCAGACGAAGAACGTTTGACTGAAGATGGTGATTCTGGTGATAACAAGGCAACTAATTCATCTGGCAGCGATGATGTAGATGAGGATGATAGTTCTGGTGACGACGCAAGCGGAAGCGCGAATAAGGACGAaactgatgatgacgataatccTACTTATGTCTCTAAAGACCATAATAAAAATAATGTGAATCAGGAGGAACCAGGAGCAGAGCTCGAGAGAAAAacagaacaatttgaaaacgaagcaaaatattttgacaatTCGTCTGATCAATTTTATGATGGAATCATAAAAAATAAGttttctttttctttaaggAACAAGTTTGCAAGGGGTGAGAAGAGAAAAACGTTAaaaggaaaattgaaagaaaatggccTGATGTATTTCAAAAAGTTTTCCTGTACTCCATTGCACCCAAAAGTTCTTCTTTACAATCGAATATTTAAAACAGGAAGCACAAGTTTGAATTTTTACATGATGGAGAATGGAAAAGGAAACAACTTCAAAGTTCGCATAGGGTCAACAGAAGATTGGTATAAAACTGGTGACGCATATCCCTATCCCAAAGAGATtgaaaaattcgcaaaaatatcaccaaagAAAAGATTCTTCTCAGCGCATTTCTTTTTCCGTGGTGATTTAGAAATTGGAAAACCTCATACGTTCATAAATCAAGTCAGAGACCCAGTGGAAAGGGTTATCTCACATTACTATTACATGAGGCAAAGTAAGAATAGGCCTAAACGACGAATTATAGAGATGATAAAAAGTGGACAATTCAATGAAACCTTGGATGAATGCTTGATCCAGCAGCATCGTGGTTGCGAGAGTAATGTCATGACACATTTCTTCTGTGGTAAGGCGTCATATTGTGAATCTGGGTCAGTAAAGGCGGTCAACACAGCAAAGTACAACATGAAACATTATTACGCAGCCATTGGCCTACTTGATCGCATGGATGAATATCTTGAAATTCTGAAATTGAGGCTGCCACGATTTTTCCCCTCAACTGCACGAAGTTTGAGTTGGGAAAAAGAGAATGCGAATAAAGAGTATCGATCTGGTATATCACAAGGgactttgaaaaatatcaagacTGCAAATAGCGCTGATTATGAGATATACGAATACGCCCAAGAGCTCTTCGAAAAACAGTTAGAGGCATGCAAATCAAAACTATTGTAG

Transcript

evm.model.HiC_scaffold_137.18

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O17645	Heparan sulfate 2-O-sulfotransferase hst-2 OS=Caenorhabditis elegans OX=6239 GN=hst-2 PE=1 SV=2
Q7LGA3	Heparan sulfate 2-O-sulfotransferase 1 OS=Homo sapiens OX=9606 GN=HS2ST1 PE=1 SV=1
Q5R621	Heparan sulfate 2-O-sulfotransferase 1 OS=Pongo abelii OX=9601 GN=HS2ST1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002482 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03567 all species →	Sulfotransfer_2	Sulfotransferase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007734 all species →	Family	Heparan sulphate 2-O-sulfotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005331 all species →	Family	Sulfotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12129 all species →	HEPARAN SULFATE 2-O-SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004394 all species →	Molecular Function	heparan sulfate 2-O-sulfotransferase activity	Interproscan
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0015014 all species →	Biological Process	heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Interproscan
GO:0015015 all species →	Biological Process	heparan sulfate proteoglycan biosynthetic process, enzymatic modification	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_137.18.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.